Experiment: KLEB17 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS13005 and BWI76_RS13010 overlap by 4 nucleotides BWI76_RS13010 and BWI76_RS13015 are separated by 415 nucleotides
BWI76_RS13005: BWI76_RS13005 - thiamine pyrophosphate protein TPP-binding protein, at 2,712,797 to 2,714,491
_RS13005
BWI76_RS13010: BWI76_RS13010 - LysR family transcriptional regulator, at 2,714,488 to 2,715,408
_RS13010
BWI76_RS13015: BWI76_RS13015 - LysR family transcriptional regulator, at 2,715,824 to 2,716,735
_RS13015
Position (kb)
2714
2715
2716 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2713.560 kb on - strand, within BWI76_RS13005 at 2713.616 kb on + strand, within BWI76_RS13005 at 2713.624 kb on - strand, within BWI76_RS13005 at 2713.646 kb on - strand, within BWI76_RS13005 at 2713.694 kb on + strand, within BWI76_RS13005 at 2713.694 kb on + strand, within BWI76_RS13005 at 2713.703 kb on - strand at 2713.712 kb on - strand, within BWI76_RS13005 at 2713.712 kb on - strand, within BWI76_RS13005 at 2713.713 kb on - strand, within BWI76_RS13005 at 2713.713 kb on - strand at 2713.758 kb on - strand, within BWI76_RS13005 at 2713.760 kb on + strand, within BWI76_RS13005 at 2713.766 kb on - strand, within BWI76_RS13005 at 2713.915 kb on + strand, within BWI76_RS13005 at 2714.090 kb on + strand, within BWI76_RS13005 at 2714.150 kb on + strand, within BWI76_RS13005 at 2714.182 kb on + strand at 2714.187 kb on + strand, within BWI76_RS13005 at 2714.187 kb on + strand, within BWI76_RS13005 at 2714.189 kb on + strand, within BWI76_RS13005 at 2714.190 kb on - strand, within BWI76_RS13005 at 2714.501 kb on + strand at 2714.501 kb on + strand at 2714.815 kb on + strand, within BWI76_RS13010 at 2714.843 kb on - strand, within BWI76_RS13010 at 2715.004 kb on + strand, within BWI76_RS13010 at 2715.092 kb on - strand, within BWI76_RS13010 at 2715.184 kb on + strand, within BWI76_RS13010 at 2715.237 kb on - strand, within BWI76_RS13010 at 2715.401 kb on + strand at 2715.759 kb on - strand at 2715.800 kb on - strand at 2715.900 kb on + strand at 2715.905 kb on + strand at 2715.908 kb on - strand at 2715.910 kb on + strand at 2715.918 kb on - strand, within BWI76_RS13015 at 2715.974 kb on - strand, within BWI76_RS13015 at 2715.979 kb on - strand, within BWI76_RS13015 at 2716.020 kb on - strand, within BWI76_RS13015 at 2716.046 kb on - strand, within BWI76_RS13015 at 2716.054 kb on + strand, within BWI76_RS13015 at 2716.238 kb on - strand, within BWI76_RS13015
Per-strain Table
Position Strand Gene LocusTag Fraction KLEB17 MOI 1 remove 2,713,560 - BWI76_RS13005 0.45 +0.2 2,713,616 + BWI76_RS13005 0.48 -2.8 2,713,624 - BWI76_RS13005 0.49 -1.1 2,713,646 - BWI76_RS13005 0.50 +2.0 2,713,694 + BWI76_RS13005 0.53 -2.6 2,713,694 + BWI76_RS13005 0.53 +0.9 2,713,703 - -0.3 2,713,712 - BWI76_RS13005 0.54 +0.1 2,713,712 - BWI76_RS13005 0.54 -0.2 2,713,713 - BWI76_RS13005 0.54 -0.7 2,713,713 - +0.0 2,713,758 - BWI76_RS13005 0.57 -0.2 2,713,760 + BWI76_RS13005 0.57 -0.3 2,713,766 - BWI76_RS13005 0.57 -0.0 2,713,915 + BWI76_RS13005 0.66 -0.8 2,714,090 + BWI76_RS13005 0.76 +3.5 2,714,150 + BWI76_RS13005 0.80 -0.3 2,714,182 + +2.0 2,714,187 + BWI76_RS13005 0.82 +1.5 2,714,187 + BWI76_RS13005 0.82 -3.4 2,714,189 + BWI76_RS13005 0.82 +1.0 2,714,190 - BWI76_RS13005 0.82 +0.9 2,714,501 + -1.5 2,714,501 + +1.0 2,714,815 + BWI76_RS13010 0.36 +0.3 2,714,843 - BWI76_RS13010 0.39 +1.1 2,715,004 + BWI76_RS13010 0.56 -1.7 2,715,092 - BWI76_RS13010 0.66 -4.1 2,715,184 + BWI76_RS13010 0.76 -0.4 2,715,237 - BWI76_RS13010 0.81 +3.6 2,715,401 + +1.8 2,715,759 - -0.0 2,715,800 - -0.2 2,715,900 + -2.4 2,715,905 + -1.2 2,715,908 - -3.0 2,715,910 + -1.0 2,715,918 - BWI76_RS13015 0.10 -0.2 2,715,974 - BWI76_RS13015 0.16 -1.6 2,715,979 - BWI76_RS13015 0.17 -0.1 2,716,020 - BWI76_RS13015 0.21 +0.9 2,716,046 - BWI76_RS13015 0.24 -0.1 2,716,054 + BWI76_RS13015 0.25 +0.9 2,716,238 - BWI76_RS13015 0.45 -1.2
Or see this region's nucleotide sequence