Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS11470

Experiment: KLEB17 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS11460 and BWI76_RS11465 are separated by 152 nucleotidesBWI76_RS11465 and BWI76_RS11470 are separated by 27 nucleotidesBWI76_RS11470 and BWI76_RS11475 are separated by 361 nucleotides BWI76_RS11460: BWI76_RS11460 - DUF441 family protein, at 2,411,742 to 2,412,188 _RS11460 BWI76_RS11465: BWI76_RS11465 - hypothetical protein, at 2,412,341 to 2,412,841 _RS11465 BWI76_RS11470: BWI76_RS11470 - sensor domain-containing diguanylate cyclase, at 2,412,869 to 2,414,371 _RS11470 BWI76_RS11475: BWI76_RS11475 - glycosyl transferase, at 2,414,733 to 2,415,890 _RS11475 Position (kb) 2412 2413 2414 2415Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2412.074 kb on + strand, within BWI76_RS11460at 2412.164 kb on - strandat 2412.181 kb on - strandat 2412.197 kb on - strandat 2412.197 kb on - strandat 2412.367 kb on + strandat 2412.558 kb on + strand, within BWI76_RS11465at 2412.680 kb on + strand, within BWI76_RS11465at 2412.696 kb on + strand, within BWI76_RS11465at 2412.773 kb on - strand, within BWI76_RS11465at 2412.980 kb on + strandat 2413.026 kb on + strand, within BWI76_RS11470at 2413.041 kb on - strand, within BWI76_RS11470at 2413.125 kb on - strandat 2413.438 kb on + strand, within BWI76_RS11470at 2413.438 kb on + strand, within BWI76_RS11470at 2413.470 kb on + strand, within BWI76_RS11470at 2413.799 kb on + strand, within BWI76_RS11470at 2413.799 kb on + strand, within BWI76_RS11470at 2413.799 kb on + strandat 2413.807 kb on - strand, within BWI76_RS11470at 2413.814 kb on - strand, within BWI76_RS11470at 2414.021 kb on - strand, within BWI76_RS11470at 2414.039 kb on - strand, within BWI76_RS11470at 2414.046 kb on + strand, within BWI76_RS11470at 2414.046 kb on + strand, within BWI76_RS11470at 2414.049 kb on - strand, within BWI76_RS11470at 2414.132 kb on + strand, within BWI76_RS11470at 2414.447 kb on - strandat 2414.449 kb on + strandat 2414.454 kb on + strandat 2414.682 kb on + strandat 2414.690 kb on - strandat 2414.690 kb on - strandat 2414.690 kb on - strandat 2414.690 kb on - strandat 2414.690 kb on - strandat 2414.692 kb on + strandat 2414.692 kb on + strandat 2414.700 kb on - strandat 2414.700 kb on - strandat 2414.700 kb on - strandat 2414.700 kb on - strandat 2414.700 kb on - strandat 2414.704 kb on + strandat 2414.706 kb on + strandat 2414.706 kb on + strandat 2414.707 kb on + strandat 2414.719 kb on + strandat 2414.719 kb on + strandat 2414.727 kb on - strandat 2414.727 kb on - strandat 2414.727 kb on - strandat 2414.751 kb on + strandat 2414.751 kb on + strandat 2414.751 kb on + strandat 2414.751 kb on + strandat 2414.753 kb on + strandat 2414.759 kb on - strandat 2414.761 kb on - strandat 2414.763 kb on + strandat 2414.840 kb on + strandat 2414.840 kb on + strandat 2414.889 kb on + strand, within BWI76_RS11475at 2414.889 kb on + strand, within BWI76_RS11475at 2414.889 kb on + strand, within BWI76_RS11475at 2414.889 kb on + strand, within BWI76_RS11475at 2414.897 kb on - strand, within BWI76_RS11475at 2414.897 kb on - strand, within BWI76_RS11475at 2414.897 kb on - strand, within BWI76_RS11475at 2414.897 kb on - strand, within BWI76_RS11475at 2414.897 kb on - strandat 2414.897 kb on - strand, within BWI76_RS11475at 2414.934 kb on + strand, within BWI76_RS11475at 2414.964 kb on - strand, within BWI76_RS11475at 2414.966 kb on + strand, within BWI76_RS11475at 2414.966 kb on + strand, within BWI76_RS11475at 2414.966 kb on + strand, within BWI76_RS11475at 2414.966 kb on + strand, within BWI76_RS11475at 2414.966 kb on + strand, within BWI76_RS11475at 2414.966 kb on + strand, within BWI76_RS11475at 2414.974 kb on - strand, within BWI76_RS11475at 2414.978 kb on + strand, within BWI76_RS11475at 2414.988 kb on + strand, within BWI76_RS11475at 2414.991 kb on - strand, within BWI76_RS11475at 2415.015 kb on + strand, within BWI76_RS11475at 2415.025 kb on + strand, within BWI76_RS11475at 2415.080 kb on - strand, within BWI76_RS11475

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Per-strain Table

Position Strand Gene LocusTag Fraction KLEB17 MOI 1
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2,412,074 + BWI76_RS11460 0.74 +0.4
2,412,164 - +0.2
2,412,181 - -3.1
2,412,197 - +0.5
2,412,197 - +1.6
2,412,367 + -2.7
2,412,558 + BWI76_RS11465 0.43 -2.1
2,412,680 + BWI76_RS11465 0.68 -3.3
2,412,696 + BWI76_RS11465 0.71 -1.6
2,412,773 - BWI76_RS11465 0.86 -0.4
2,412,980 + -1.6
2,413,026 + BWI76_RS11470 0.10 -1.9
2,413,041 - BWI76_RS11470 0.11 +0.8
2,413,125 - +2.1
2,413,438 + BWI76_RS11470 0.38 -0.2
2,413,438 + BWI76_RS11470 0.38 -2.7
2,413,470 + BWI76_RS11470 0.40 -1.9
2,413,799 + BWI76_RS11470 0.62 -3.5
2,413,799 + BWI76_RS11470 0.62 -1.9
2,413,799 + +3.7
2,413,807 - BWI76_RS11470 0.62 -0.5
2,413,814 - BWI76_RS11470 0.63 +0.3
2,414,021 - BWI76_RS11470 0.77 -1.4
2,414,039 - BWI76_RS11470 0.78 -2.1
2,414,046 + BWI76_RS11470 0.78 -3.2
2,414,046 + BWI76_RS11470 0.78 -2.4
2,414,049 - BWI76_RS11470 0.79 -0.3
2,414,132 + BWI76_RS11470 0.84 -1.5
2,414,447 - -1.5
2,414,449 + -1.2
2,414,454 + -0.0
2,414,682 + +2.5
2,414,690 - -0.2
2,414,690 - -0.5
2,414,690 - -0.7
2,414,690 - -0.9
2,414,690 - +0.1
2,414,692 + -1.4
2,414,692 + -3.6
2,414,700 - +0.8
2,414,700 - +0.0
2,414,700 - -1.5
2,414,700 - +0.9
2,414,700 - -0.5
2,414,704 + -0.0
2,414,706 + +1.4
2,414,706 + +3.1
2,414,707 + +2.3
2,414,719 + +2.3
2,414,719 + +3.0
2,414,727 - +2.1
2,414,727 - +0.2
2,414,727 - -1.4
2,414,751 + +0.7
2,414,751 + +0.2
2,414,751 + +1.1
2,414,751 + -0.2
2,414,753 + +1.0
2,414,759 - +1.8
2,414,761 - -2.2
2,414,763 + +0.0
2,414,840 + +1.3
2,414,840 + +2.1
2,414,889 + BWI76_RS11475 0.13 +0.6
2,414,889 + BWI76_RS11475 0.13 -2.0
2,414,889 + BWI76_RS11475 0.13 +0.5
2,414,889 + BWI76_RS11475 0.13 -1.5
2,414,897 - BWI76_RS11475 0.14 -0.5
2,414,897 - BWI76_RS11475 0.14 -1.7
2,414,897 - BWI76_RS11475 0.14 -0.7
2,414,897 - BWI76_RS11475 0.14 -0.1
2,414,897 - +1.1
2,414,897 - BWI76_RS11475 0.14 +1.1
2,414,934 + BWI76_RS11475 0.17 +1.6
2,414,964 - BWI76_RS11475 0.20 +1.2
2,414,966 + BWI76_RS11475 0.20 -1.8
2,414,966 + BWI76_RS11475 0.20 -1.9
2,414,966 + BWI76_RS11475 0.20 +1.2
2,414,966 + BWI76_RS11475 0.20 +0.8
2,414,966 + BWI76_RS11475 0.20 -0.7
2,414,966 + BWI76_RS11475 0.20 -1.2
2,414,974 - BWI76_RS11475 0.21 +0.1
2,414,978 + BWI76_RS11475 0.21 -1.4
2,414,988 + BWI76_RS11475 0.22 -2.7
2,414,991 - BWI76_RS11475 0.22 -0.7
2,415,015 + BWI76_RS11475 0.24 +1.1
2,415,025 + BWI76_RS11475 0.25 -0.0
2,415,080 - BWI76_RS11475 0.30 -0.5

Or see this region's nucleotide sequence