Experiment: KLEB17 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS07675 and BWI76_RS07680 are separated by 364 nucleotides BWI76_RS07680 and BWI76_RS07685 overlap by 8 nucleotides BWI76_RS07685 and BWI76_RS07690 are separated by 53 nucleotides
BWI76_RS07675: BWI76_RS07675 - DeoR family transcriptional regulator, at 1,626,024 to 1,626,974
_RS07675
BWI76_RS07680: BWI76_RS07680 - transketolase, at 1,627,339 to 1,628,169
_RS07680
BWI76_RS07685: BWI76_RS07685 - transketolase, at 1,628,162 to 1,629,097
_RS07685
BWI76_RS07690: BWI76_RS07690 - enterochelin synthetase component D, at 1,629,151 to 1,629,774
_RS07690
Position (kb)
1627
1628
1629 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1626.433 kb on - strand, within BWI76_RS07675 at 1626.445 kb on - strand, within BWI76_RS07675 at 1626.746 kb on + strand, within BWI76_RS07675 at 1626.824 kb on - strand, within BWI76_RS07675 at 1626.905 kb on + strand at 1626.927 kb on - strand at 1627.011 kb on - strand at 1627.181 kb on - strand at 1627.204 kb on + strand at 1627.251 kb on - strand at 1627.388 kb on - strand at 1627.482 kb on + strand, within BWI76_RS07680 at 1627.564 kb on - strand, within BWI76_RS07680 at 1627.817 kb on - strand, within BWI76_RS07680 at 1628.179 kb on + strand at 1628.630 kb on - strand, within BWI76_RS07685 at 1629.163 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KLEB17 MOI 1 remove 1,626,433 - BWI76_RS07675 0.43 -2.6 1,626,445 - BWI76_RS07675 0.44 +0.9 1,626,746 + BWI76_RS07675 0.76 +0.2 1,626,824 - BWI76_RS07675 0.84 +0.6 1,626,905 + +0.9 1,626,927 - +0.7 1,627,011 - -1.2 1,627,181 - -0.9 1,627,204 + -0.3 1,627,251 - +0.3 1,627,388 - -1.1 1,627,482 + BWI76_RS07680 0.17 +1.5 1,627,564 - BWI76_RS07680 0.27 +2.1 1,627,817 - BWI76_RS07680 0.58 +0.1 1,628,179 + +1.0 1,628,630 - BWI76_RS07685 0.50 -1.7 1,629,163 + -0.7
Or see this region's nucleotide sequence