Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS07460

Experiment: KLEB17 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS07455 and BWI76_RS07460 are separated by 118 nucleotidesBWI76_RS07460 and BWI76_RS07465 overlap by 1 nucleotidesBWI76_RS07465 and BWI76_RS07470 are separated by 190 nucleotides BWI76_RS07455: BWI76_RS07455 - NAD(P)H nitroreductase, at 1,573,790 to 1,574,443 _RS07455 BWI76_RS07460: BWI76_RS07460 - hypothetical protein, at 1,574,562 to 1,574,930 _RS07460 BWI76_RS07465: BWI76_RS07465 - TetR family transcriptional regulator, at 1,574,930 to 1,575,511 _RS07465 BWI76_RS07470: BWI76_RS07470 - MBL fold metallo-hydrolase, at 1,575,702 to 1,576,802 _RS07470 Position (kb) 1574 1575Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1573.704 kb on + strandat 1573.705 kb on - strandat 1573.714 kb on + strandat 1573.827 kb on + strandat 1573.882 kb on + strand, within BWI76_RS07455at 1573.901 kb on - strand, within BWI76_RS07455at 1573.906 kb on - strand, within BWI76_RS07455at 1574.160 kb on + strand, within BWI76_RS07455at 1574.165 kb on + strand, within BWI76_RS07455at 1574.465 kb on - strandat 1574.702 kb on + strand, within BWI76_RS07460at 1574.900 kb on + strandat 1574.947 kb on - strandat 1575.250 kb on - strand, within BWI76_RS07465at 1575.306 kb on + strand, within BWI76_RS07465at 1575.514 kb on - strandat 1575.575 kb on - strandat 1575.835 kb on - strand, within BWI76_RS07470

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Per-strain Table

Position Strand Gene LocusTag Fraction KLEB17 MOI 1
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1,573,704 + +0.4
1,573,705 - +1.5
1,573,714 + +2.1
1,573,827 + -1.2
1,573,882 + BWI76_RS07455 0.14 -0.5
1,573,901 - BWI76_RS07455 0.17 +0.5
1,573,906 - BWI76_RS07455 0.18 -1.4
1,574,160 + BWI76_RS07455 0.57 +0.5
1,574,165 + BWI76_RS07455 0.57 +1.6
1,574,465 - +1.0
1,574,702 + BWI76_RS07460 0.38 -0.3
1,574,900 + -1.8
1,574,947 - -0.5
1,575,250 - BWI76_RS07465 0.55 +3.2
1,575,306 + BWI76_RS07465 0.65 -1.8
1,575,514 - -0.4
1,575,575 - -0.0
1,575,835 - BWI76_RS07470 0.12 +0.0

Or see this region's nucleotide sequence