Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS06220

Experiment: KLEB17 MOI 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS06210 and BWI76_RS06215 are separated by 37 nucleotidesBWI76_RS06215 and BWI76_RS06220 are separated by 288 nucleotidesBWI76_RS06220 and BWI76_RS06225 overlap by 4 nucleotides BWI76_RS06210: BWI76_RS06210 - fructokinase, at 1,301,468 to 1,302,426 _RS06210 BWI76_RS06215: BWI76_RS06215 - NUDIX hydrolase, at 1,302,464 to 1,302,826 _RS06215 BWI76_RS06220: BWI76_RS06220 - exonuclease subunit SbcC, at 1,303,115 to 1,306,249 _RS06220 BWI76_RS06225: BWI76_RS06225 - exonuclease sbcCD subunit D, at 1,306,246 to 1,307,448 _RS06225 Position (kb) 1303 1304 1305 1306 1307Strain fitness (log2 ratio) -1 0 1 2at 1302.125 kb on + strand, within BWI76_RS06210at 1302.146 kb on + strand, within BWI76_RS06210at 1302.154 kb on - strand, within BWI76_RS06210at 1302.308 kb on - strand, within BWI76_RS06210at 1302.308 kb on - strand, within BWI76_RS06210at 1302.454 kb on + strandat 1302.490 kb on - strandat 1302.530 kb on + strand, within BWI76_RS06215at 1303.027 kb on - strandat 1303.354 kb on + strandat 1303.527 kb on - strand, within BWI76_RS06220at 1303.976 kb on - strand, within BWI76_RS06220at 1303.997 kb on + strand, within BWI76_RS06220at 1304.106 kb on - strand, within BWI76_RS06220at 1304.814 kb on + strand, within BWI76_RS06220at 1305.012 kb on + strand, within BWI76_RS06220at 1305.020 kb on - strand, within BWI76_RS06220at 1305.229 kb on - strand, within BWI76_RS06220at 1305.804 kb on - strand, within BWI76_RS06220at 1306.072 kb on - strandat 1306.072 kb on - strandat 1306.174 kb on + strandat 1306.296 kb on + strandat 1306.427 kb on - strand, within BWI76_RS06225at 1306.854 kb on - strand, within BWI76_RS06225at 1306.946 kb on - strand, within BWI76_RS06225at 1307.040 kb on - strand, within BWI76_RS06225

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KLEB17 MOI 1
remove
1,302,125 + BWI76_RS06210 0.69 -1.0
1,302,146 + BWI76_RS06210 0.71 -0.4
1,302,154 - BWI76_RS06210 0.72 +0.0
1,302,308 - BWI76_RS06210 0.88 -0.8
1,302,308 - BWI76_RS06210 0.88 +0.2
1,302,454 + -0.2
1,302,490 - -0.2
1,302,530 + BWI76_RS06215 0.18 +0.3
1,303,027 - -0.8
1,303,354 + +1.1
1,303,527 - BWI76_RS06220 0.13 +1.5
1,303,976 - BWI76_RS06220 0.27 +1.0
1,303,997 + BWI76_RS06220 0.28 +0.8
1,304,106 - BWI76_RS06220 0.32 +1.4
1,304,814 + BWI76_RS06220 0.54 +0.3
1,305,012 + BWI76_RS06220 0.61 +0.1
1,305,020 - BWI76_RS06220 0.61 +1.6
1,305,229 - BWI76_RS06220 0.67 +0.8
1,305,804 - BWI76_RS06220 0.86 +1.6
1,306,072 - -0.1
1,306,072 - -1.2
1,306,174 + +2.7
1,306,296 + +1.2
1,306,427 - BWI76_RS06225 0.15 +1.5
1,306,854 - BWI76_RS06225 0.51 +2.0
1,306,946 - BWI76_RS06225 0.58 +1.1
1,307,040 - BWI76_RS06225 0.66 +0.7

Or see this region's nucleotide sequence