Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS05665

Experiment: KLEB17 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS05655 and BWI76_RS05660 are separated by 10 nucleotidesBWI76_RS05660 and BWI76_RS05665 are separated by 17 nucleotidesBWI76_RS05665 and BWI76_RS05670 are separated by 103 nucleotides BWI76_RS05655: BWI76_RS05655 - hypothetical protein, at 1,188,163 to 1,188,420 _RS05655 BWI76_RS05660: BWI76_RS05660 - N-acetyltransferase, at 1,188,431 to 1,188,982 _RS05660 BWI76_RS05665: BWI76_RS05665 - SAM-dependent methyltransferase, at 1,189,000 to 1,190,628 _RS05665 BWI76_RS05670: BWI76_RS05670 - porin, at 1,190,732 to 1,192,072 _RS05670 Position (kb) 1188 1189 1190 1191Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1188.010 kb on + strandat 1188.204 kb on + strand, within BWI76_RS05655at 1188.368 kb on - strand, within BWI76_RS05655at 1188.377 kb on - strand, within BWI76_RS05655at 1188.494 kb on + strand, within BWI76_RS05660at 1188.494 kb on + strand, within BWI76_RS05660at 1188.637 kb on + strand, within BWI76_RS05660at 1188.680 kb on - strand, within BWI76_RS05660at 1188.680 kb on - strand, within BWI76_RS05660at 1188.725 kb on + strand, within BWI76_RS05660at 1188.741 kb on + strand, within BWI76_RS05660at 1188.741 kb on + strand, within BWI76_RS05660at 1188.751 kb on + strand, within BWI76_RS05660at 1188.785 kb on - strand, within BWI76_RS05660at 1188.816 kb on + strand, within BWI76_RS05660at 1188.824 kb on - strand, within BWI76_RS05660at 1188.844 kb on - strand, within BWI76_RS05660at 1188.853 kb on + strand, within BWI76_RS05660at 1188.955 kb on + strandat 1189.046 kb on + strandat 1189.360 kb on - strand, within BWI76_RS05665at 1189.504 kb on + strand, within BWI76_RS05665at 1189.512 kb on - strand, within BWI76_RS05665at 1189.585 kb on + strand, within BWI76_RS05665at 1189.619 kb on - strand, within BWI76_RS05665at 1189.647 kb on + strand, within BWI76_RS05665at 1189.754 kb on + strand, within BWI76_RS05665at 1189.968 kb on - strand, within BWI76_RS05665at 1189.999 kb on - strand, within BWI76_RS05665at 1190.044 kb on - strand, within BWI76_RS05665at 1190.044 kb on - strand, within BWI76_RS05665at 1190.254 kb on - strand, within BWI76_RS05665at 1190.480 kb on + strandat 1190.654 kb on - strandat 1190.815 kb on + strandat 1190.835 kb on - strandat 1190.853 kb on + strandat 1190.853 kb on + strandat 1190.853 kb on + strandat 1190.945 kb on - strand, within BWI76_RS05670at 1190.999 kb on + strand, within BWI76_RS05670at 1191.166 kb on - strand, within BWI76_RS05670at 1191.264 kb on + strand, within BWI76_RS05670at 1191.481 kb on + strand, within BWI76_RS05670at 1191.500 kb on - strand, within BWI76_RS05670at 1191.603 kb on - strand, within BWI76_RS05670

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Per-strain Table

Position Strand Gene LocusTag Fraction KLEB17 MOI 1
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1,188,010 + +0.2
1,188,204 + BWI76_RS05655 0.16 -0.4
1,188,368 - BWI76_RS05655 0.79 -2.2
1,188,377 - BWI76_RS05655 0.83 -1.8
1,188,494 + BWI76_RS05660 0.11 -3.7
1,188,494 + BWI76_RS05660 0.11 +0.3
1,188,637 + BWI76_RS05660 0.37 -0.1
1,188,680 - BWI76_RS05660 0.45 -3.1
1,188,680 - BWI76_RS05660 0.45 -0.6
1,188,725 + BWI76_RS05660 0.53 +0.2
1,188,741 + BWI76_RS05660 0.56 +0.5
1,188,741 + BWI76_RS05660 0.56 -0.3
1,188,751 + BWI76_RS05660 0.58 +0.2
1,188,785 - BWI76_RS05660 0.64 -0.2
1,188,816 + BWI76_RS05660 0.70 -1.7
1,188,824 - BWI76_RS05660 0.71 -0.5
1,188,844 - BWI76_RS05660 0.75 +1.2
1,188,853 + BWI76_RS05660 0.76 -2.4
1,188,955 + -0.1
1,189,046 + +1.9
1,189,360 - BWI76_RS05665 0.22 +1.5
1,189,504 + BWI76_RS05665 0.31 -0.0
1,189,512 - BWI76_RS05665 0.31 -1.2
1,189,585 + BWI76_RS05665 0.36 +1.9
1,189,619 - BWI76_RS05665 0.38 -1.5
1,189,647 + BWI76_RS05665 0.40 -2.1
1,189,754 + BWI76_RS05665 0.46 +0.9
1,189,968 - BWI76_RS05665 0.59 -1.1
1,189,999 - BWI76_RS05665 0.61 +0.2
1,190,044 - BWI76_RS05665 0.64 +0.2
1,190,044 - BWI76_RS05665 0.64 +0.6
1,190,254 - BWI76_RS05665 0.77 +1.6
1,190,480 + -1.3
1,190,654 - -2.8
1,190,815 + -0.3
1,190,835 - -0.6
1,190,853 + +0.9
1,190,853 + -1.5
1,190,853 + -2.1
1,190,945 - BWI76_RS05670 0.16 -0.4
1,190,999 + BWI76_RS05670 0.20 -0.7
1,191,166 - BWI76_RS05670 0.32 +0.1
1,191,264 + BWI76_RS05670 0.40 -0.4
1,191,481 + BWI76_RS05670 0.56 +0.2
1,191,500 - BWI76_RS05670 0.57 +1.0
1,191,603 - BWI76_RS05670 0.65 -0.2

Or see this region's nucleotide sequence