Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS00645

Experiment: KLEB17 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS00635 and BWI76_RS00640 are separated by 54 nucleotidesBWI76_RS00640 and BWI76_RS00645 overlap by 4 nucleotidesBWI76_RS00645 and BWI76_RS00650 are separated by 148 nucleotides BWI76_RS00635: BWI76_RS00635 - inulin fructotransferase (DFA-I-forming), at 129,269 to 130,633 _RS00635 BWI76_RS00640: BWI76_RS00640 - L-rhamnose mutarotase, at 130,688 to 131,002 _RS00640 BWI76_RS00645: BWI76_RS00645 - lactaldehyde reductase, at 130,999 to 132,147 _RS00645 BWI76_RS00650: BWI76_RS00650 - rhamnose ABC transporter permease component, at 132,296 to 133,300 _RS00650 Position (kb) 130 131 132 133Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 130.051 kb on - strand, within BWI76_RS00635at 130.056 kb on + strand, within BWI76_RS00635at 130.071 kb on + strandat 130.071 kb on + strand, within BWI76_RS00635at 130.073 kb on + strand, within BWI76_RS00635at 130.084 kb on - strand, within BWI76_RS00635at 130.111 kb on + strand, within BWI76_RS00635at 130.136 kb on + strand, within BWI76_RS00635at 130.144 kb on - strand, within BWI76_RS00635at 130.162 kb on - strand, within BWI76_RS00635at 130.185 kb on + strand, within BWI76_RS00635at 130.185 kb on + strand, within BWI76_RS00635at 130.185 kb on + strand, within BWI76_RS00635at 130.185 kb on + strand, within BWI76_RS00635at 130.185 kb on + strand, within BWI76_RS00635at 130.187 kb on + strand, within BWI76_RS00635at 130.187 kb on + strand, within BWI76_RS00635at 130.187 kb on + strand, within BWI76_RS00635at 130.195 kb on - strand, within BWI76_RS00635at 130.210 kb on + strand, within BWI76_RS00635at 130.219 kb on - strand, within BWI76_RS00635at 130.228 kb on + strand, within BWI76_RS00635at 130.236 kb on + strand, within BWI76_RS00635at 130.236 kb on + strand, within BWI76_RS00635at 130.236 kb on + strand, within BWI76_RS00635at 130.236 kb on + strand, within BWI76_RS00635at 130.236 kb on + strand, within BWI76_RS00635at 130.236 kb on - strand, within BWI76_RS00635at 130.237 kb on - strand, within BWI76_RS00635at 130.243 kb on - strand, within BWI76_RS00635at 130.246 kb on + strand, within BWI76_RS00635at 130.251 kb on + strandat 130.254 kb on - strand, within BWI76_RS00635at 130.254 kb on - strand, within BWI76_RS00635at 130.254 kb on - strand, within BWI76_RS00635at 130.307 kb on - strand, within BWI76_RS00635at 130.317 kb on - strandat 130.329 kb on + strand, within BWI76_RS00635at 130.329 kb on + strand, within BWI76_RS00635at 130.329 kb on + strand, within BWI76_RS00635at 130.329 kb on + strand, within BWI76_RS00635at 130.337 kb on - strand, within BWI76_RS00635at 130.337 kb on - strand, within BWI76_RS00635at 130.337 kb on - strand, within BWI76_RS00635at 130.403 kb on + strand, within BWI76_RS00635at 130.462 kb on + strand, within BWI76_RS00635at 130.462 kb on + strand, within BWI76_RS00635at 130.462 kb on + strand, within BWI76_RS00635at 130.465 kb on - strand, within BWI76_RS00635at 130.470 kb on - strand, within BWI76_RS00635at 130.488 kb on + strand, within BWI76_RS00635at 130.488 kb on + strand, within BWI76_RS00635at 130.488 kb on + strand, within BWI76_RS00635at 130.497 kb on + strandat 130.525 kb on + strandat 130.585 kb on - strandat 130.599 kb on + strandat 130.661 kb on + strandat 130.707 kb on + strandat 130.733 kb on - strand, within BWI76_RS00640at 130.842 kb on - strand, within BWI76_RS00640at 131.161 kb on - strand, within BWI76_RS00645at 131.192 kb on - strand, within BWI76_RS00645at 131.386 kb on + strand, within BWI76_RS00645at 131.386 kb on + strand, within BWI76_RS00645at 131.394 kb on - strand, within BWI76_RS00645at 131.512 kb on - strand, within BWI76_RS00645at 131.555 kb on - strand, within BWI76_RS00645at 131.563 kb on - strand, within BWI76_RS00645at 131.674 kb on + strand, within BWI76_RS00645at 131.792 kb on - strand, within BWI76_RS00645at 131.945 kb on - strand, within BWI76_RS00645at 132.025 kb on - strand, within BWI76_RS00645at 132.136 kb on + strandat 132.186 kb on + strandat 132.266 kb on - strandat 132.523 kb on + strand, within BWI76_RS00650at 132.619 kb on + strand, within BWI76_RS00650at 132.684 kb on + strand, within BWI76_RS00650at 132.786 kb on - strand, within BWI76_RS00650at 132.791 kb on - strand, within BWI76_RS00650at 132.832 kb on + strand, within BWI76_RS00650at 132.897 kb on + strand, within BWI76_RS00650at 132.907 kb on + strand, within BWI76_RS00650at 132.947 kb on + strand, within BWI76_RS00650at 133.029 kb on - strand, within BWI76_RS00650

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Per-strain Table

Position Strand Gene LocusTag Fraction KLEB17 MOI 1
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130,051 - BWI76_RS00635 0.57 +1.5
130,056 + BWI76_RS00635 0.58 +0.0
130,071 + -0.2
130,071 + BWI76_RS00635 0.59 -0.8
130,073 + BWI76_RS00635 0.59 +0.0
130,084 - BWI76_RS00635 0.60 +2.0
130,111 + BWI76_RS00635 0.62 +0.7
130,136 + BWI76_RS00635 0.64 -0.3
130,144 - BWI76_RS00635 0.64 -1.1
130,162 - BWI76_RS00635 0.65 -3.7
130,185 + BWI76_RS00635 0.67 -4.8
130,185 + BWI76_RS00635 0.67 -0.6
130,185 + BWI76_RS00635 0.67 +1.8
130,185 + BWI76_RS00635 0.67 +0.0
130,185 + BWI76_RS00635 0.67 -0.6
130,187 + BWI76_RS00635 0.67 -0.1
130,187 + BWI76_RS00635 0.67 +0.0
130,187 + BWI76_RS00635 0.67 -0.4
130,195 - BWI76_RS00635 0.68 -0.5
130,210 + BWI76_RS00635 0.69 -3.1
130,219 - BWI76_RS00635 0.70 -0.8
130,228 + BWI76_RS00635 0.70 -0.7
130,236 + BWI76_RS00635 0.71 -0.2
130,236 + BWI76_RS00635 0.71 +1.1
130,236 + BWI76_RS00635 0.71 -0.3
130,236 + BWI76_RS00635 0.71 +1.1
130,236 + BWI76_RS00635 0.71 +0.3
130,236 - BWI76_RS00635 0.71 +0.8
130,237 - BWI76_RS00635 0.71 -1.2
130,243 - BWI76_RS00635 0.71 +0.6
130,246 + BWI76_RS00635 0.72 -2.6
130,251 + +0.2
130,254 - BWI76_RS00635 0.72 +0.7
130,254 - BWI76_RS00635 0.72 +0.5
130,254 - BWI76_RS00635 0.72 +0.3
130,307 - BWI76_RS00635 0.76 +1.6
130,317 - +1.4
130,329 + BWI76_RS00635 0.78 -0.2
130,329 + BWI76_RS00635 0.78 +0.1
130,329 + BWI76_RS00635 0.78 -1.7
130,329 + BWI76_RS00635 0.78 +2.6
130,337 - BWI76_RS00635 0.78 +0.5
130,337 - BWI76_RS00635 0.78 +1.4
130,337 - BWI76_RS00635 0.78 +0.4
130,403 + BWI76_RS00635 0.83 -0.4
130,462 + BWI76_RS00635 0.87 -0.1
130,462 + BWI76_RS00635 0.87 -2.4
130,462 + BWI76_RS00635 0.87 +0.2
130,465 - BWI76_RS00635 0.88 -1.8
130,470 - BWI76_RS00635 0.88 +0.1
130,488 + BWI76_RS00635 0.89 +1.5
130,488 + BWI76_RS00635 0.89 +0.7
130,488 + BWI76_RS00635 0.89 +0.3
130,497 + +1.3
130,525 + +0.4
130,585 - -0.2
130,599 + +2.4
130,661 + -0.5
130,707 + -2.7
130,733 - BWI76_RS00640 0.14 +0.2
130,842 - BWI76_RS00640 0.49 -0.2
131,161 - BWI76_RS00645 0.14 +0.3
131,192 - BWI76_RS00645 0.17 +0.4
131,386 + BWI76_RS00645 0.34 -0.7
131,386 + BWI76_RS00645 0.34 +0.2
131,394 - BWI76_RS00645 0.34 +1.3
131,512 - BWI76_RS00645 0.45 +0.4
131,555 - BWI76_RS00645 0.48 +1.0
131,563 - BWI76_RS00645 0.49 +0.5
131,674 + BWI76_RS00645 0.59 +2.3
131,792 - BWI76_RS00645 0.69 -0.3
131,945 - BWI76_RS00645 0.82 +1.3
132,025 - BWI76_RS00645 0.89 -1.4
132,136 + -0.2
132,186 + +0.2
132,266 - -4.0
132,523 + BWI76_RS00650 0.23 -0.5
132,619 + BWI76_RS00650 0.32 -1.7
132,684 + BWI76_RS00650 0.39 -4.6
132,786 - BWI76_RS00650 0.49 -0.1
132,791 - BWI76_RS00650 0.49 +0.4
132,832 + BWI76_RS00650 0.53 +1.0
132,897 + BWI76_RS00650 0.60 -1.3
132,907 + BWI76_RS00650 0.61 -0.3
132,947 + BWI76_RS00650 0.65 -0.1
133,029 - BWI76_RS00650 0.73 -0.6

Or see this region's nucleotide sequence