Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS22820

Experiment: KLEB16 MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS22815 and BWI76_RS22820 are separated by 40 nucleotidesBWI76_RS22820 and BWI76_RS22825 are separated by 71 nucleotides BWI76_RS22815: BWI76_RS22815 - hybrid sensor histidine kinase/response regulator, at 4,758,554 to 4,761,307 _RS22815 BWI76_RS22820: BWI76_RS22820 - glycerate kinase, at 4,761,348 to 4,762,487 _RS22820 BWI76_RS22825: BWI76_RS22825 - glucarate dehydratase, at 4,762,559 to 4,763,899 _RS22825 Position (kb) 4761 4762 4763Strain fitness (log2 ratio) -1 0 1at 4760.412 kb on - strand, within BWI76_RS22815at 4760.606 kb on + strand, within BWI76_RS22815at 4760.646 kb on + strand, within BWI76_RS22815at 4761.020 kb on - strand, within BWI76_RS22815at 4761.096 kb on - strandat 4761.103 kb on + strandat 4761.328 kb on - strandat 4761.435 kb on - strandat 4761.571 kb on + strand, within BWI76_RS22820at 4761.781 kb on - strand, within BWI76_RS22820at 4761.943 kb on + strand, within BWI76_RS22820at 4761.978 kb on + strand, within BWI76_RS22820at 4761.978 kb on + strand, within BWI76_RS22820at 4761.986 kb on - strand, within BWI76_RS22820at 4762.452 kb on - strandat 4762.520 kb on - strandat 4762.647 kb on - strandat 4762.663 kb on + strandat 4762.900 kb on + strand, within BWI76_RS22825at 4762.947 kb on + strand, within BWI76_RS22825at 4762.947 kb on + strand, within BWI76_RS22825at 4762.947 kb on + strand, within BWI76_RS22825at 4762.947 kb on + strand, within BWI76_RS22825at 4762.955 kb on - strand, within BWI76_RS22825at 4763.004 kb on - strand, within BWI76_RS22825at 4763.005 kb on - strandat 4763.016 kb on - strand, within BWI76_RS22825at 4763.096 kb on + strand, within BWI76_RS22825at 4763.109 kb on - strand, within BWI76_RS22825at 4763.109 kb on - strand, within BWI76_RS22825at 4763.179 kb on + strand, within BWI76_RS22825

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Per-strain Table

Position Strand Gene LocusTag Fraction KLEB16 MOI 0.1
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4,760,412 - BWI76_RS22815 0.67 +0.5
4,760,606 + BWI76_RS22815 0.75 -0.1
4,760,646 + BWI76_RS22815 0.76 +0.4
4,761,020 - BWI76_RS22815 0.90 -0.4
4,761,096 - -0.1
4,761,103 + +0.3
4,761,328 - +0.2
4,761,435 - +1.3
4,761,571 + BWI76_RS22820 0.20 +0.4
4,761,781 - BWI76_RS22820 0.38 +1.6
4,761,943 + BWI76_RS22820 0.52 +0.3
4,761,978 + BWI76_RS22820 0.55 -0.0
4,761,978 + BWI76_RS22820 0.55 +0.7
4,761,986 - BWI76_RS22820 0.56 +0.6
4,762,452 - -0.3
4,762,520 - -1.0
4,762,647 - +0.3
4,762,663 + +0.2
4,762,900 + BWI76_RS22825 0.25 -0.7
4,762,947 + BWI76_RS22825 0.29 +0.6
4,762,947 + BWI76_RS22825 0.29 -0.4
4,762,947 + BWI76_RS22825 0.29 -0.6
4,762,947 + BWI76_RS22825 0.29 +0.5
4,762,955 - BWI76_RS22825 0.30 +0.0
4,763,004 - BWI76_RS22825 0.33 -0.1
4,763,005 - +0.4
4,763,016 - BWI76_RS22825 0.34 -0.6
4,763,096 + BWI76_RS22825 0.40 +0.1
4,763,109 - BWI76_RS22825 0.41 -0.1
4,763,109 - BWI76_RS22825 0.41 +0.2
4,763,179 + BWI76_RS22825 0.46 +0.5

Or see this region's nucleotide sequence