Experiment: KLEB16 MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS16945 and BWI76_RS16950 are separated by 126 nucleotides BWI76_RS16950 and BWI76_RS16955 are separated by 26 nucleotides BWI76_RS16955 and BWI76_RS16960 are separated by 509 nucleotides
BWI76_RS16945: BWI76_RS16945 - 4-hydroxyphenylpyruvate dioxygenase, at 3,514,195 to 3,516,048
_RS16945
BWI76_RS16950: BWI76_RS16950 - TetR family transcriptional regulator, at 3,516,175 to 3,516,813
_RS16950
BWI76_RS16955: BWI76_RS16955 - hypothetical protein, at 3,516,840 to 3,517,052
_RS16955
BWI76_RS16960: BWI76_RS16960 - pyruvate kinase, at 3,517,562 to 3,518,974
_RS16960
Position (kb) 3516
3517 Strain fitness (log2 ratio) -1
0
1 at 3515.508 kb on + strand, within BWI76_RS16945 at 3515.633 kb on + strand, within BWI76_RS16945 at 3515.641 kb on - strand, within BWI76_RS16945 at 3515.670 kb on - strand, within BWI76_RS16945 at 3516.302 kb on + strand, within BWI76_RS16950 at 3516.427 kb on + strand, within BWI76_RS16950 at 3516.469 kb on + strand, within BWI76_RS16950 at 3516.965 kb on + strand, within BWI76_RS16955 at 3517.113 kb on + strand at 3517.121 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KLEB16 MOI 0.1 remove 3,515,508 + BWI76_RS16945 0.71 +1.4 3,515,633 + BWI76_RS16945 0.78 +1.3 3,515,641 - BWI76_RS16945 0.78 -0.1 3,515,670 - BWI76_RS16945 0.80 +0.6 3,516,302 + BWI76_RS16950 0.20 -1.4 3,516,427 + BWI76_RS16950 0.39 -1.5 3,516,469 + BWI76_RS16950 0.46 -1.2 3,516,965 + BWI76_RS16955 0.59 +0.1 3,517,113 + +0.0 3,517,121 - -0.3
Or see this region's nucleotide sequence