Experiment: KLEB16 MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS16870 and BWI76_RS16875 are separated by 107 nucleotides BWI76_RS16875 and BWI76_RS16880 are separated by 1 nucleotides BWI76_RS16880 and BWI76_RS16885 are separated by 300 nucleotides BWI76_RS16885 and BWI76_RS16890 are separated by 33 nucleotides
BWI76_RS16870: BWI76_RS16870 - LysR family transcriptional regulator, at 3,498,725 to 3,499,618
_RS16870
BWI76_RS16875: BWI76_RS16875 - putative type I cysteine dioxygenase, at 3,499,726 to 3,500,322
_RS16875
BWI76_RS16880: BWI76_RS16880 - GlpE family protein, at 3,500,324 to 3,501,904
_RS16880
BWI76_RS16885: BWI76_RS16885 - hypothetical protein, at 3,502,205 to 3,502,389
_RS16885
BWI76_RS16890: BWI76_RS16890 - hypothetical protein, at 3,502,423 to 3,503,157
_RS16890
Position (kb)
3500
3501
3502 Strain fitness (log2 ratio)
-1
0
1
2
3
4 at 3499.376 kb on - strand, within BWI76_RS16870 at 3499.812 kb on + strand, within BWI76_RS16875 at 3499.991 kb on + strand, within BWI76_RS16875 at 3500.040 kb on - strand, within BWI76_RS16875 at 3500.097 kb on + strand, within BWI76_RS16875 at 3500.156 kb on + strand, within BWI76_RS16875 at 3500.170 kb on - strand at 3500.658 kb on - strand, within BWI76_RS16880 at 3500.753 kb on - strand, within BWI76_RS16880 at 3500.885 kb on + strand, within BWI76_RS16880 at 3501.077 kb on + strand, within BWI76_RS16880 at 3501.351 kb on + strand, within BWI76_RS16880 at 3501.675 kb on + strand, within BWI76_RS16880 at 3501.873 kb on - strand at 3501.896 kb on - strand at 3502.166 kb on - strand at 3502.434 kb on + strand at 3502.831 kb on - strand, within BWI76_RS16890
Per-strain Table
Position Strand Gene LocusTag Fraction KLEB16 MOI 0.1 remove 3,499,376 - BWI76_RS16870 0.73 -0.2 3,499,812 + BWI76_RS16875 0.14 -0.4 3,499,991 + BWI76_RS16875 0.44 -0.8 3,500,040 - BWI76_RS16875 0.53 +0.5 3,500,097 + BWI76_RS16875 0.62 -1.2 3,500,156 + BWI76_RS16875 0.72 -0.1 3,500,170 - -1.2 3,500,658 - BWI76_RS16880 0.21 -1.4 3,500,753 - BWI76_RS16880 0.27 -1.0 3,500,885 + BWI76_RS16880 0.35 -1.1 3,501,077 + BWI76_RS16880 0.48 -0.2 3,501,351 + BWI76_RS16880 0.65 +0.2 3,501,675 + BWI76_RS16880 0.85 -1.4 3,501,873 - -0.8 3,501,896 - +4.4 3,502,166 - -0.3 3,502,434 + -0.2 3,502,831 - BWI76_RS16890 0.56 -1.3
Or see this region's nucleotide sequence