Experiment: KLEB16 MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS04640 and BWI76_RS04645 are separated by 37 nucleotides BWI76_RS04645 and BWI76_RS04650 are separated by 33 nucleotides BWI76_RS04650 and BWI76_RS04655 are separated by 11 nucleotides BWI76_RS04655 and BWI76_RS04660 are separated by 10 nucleotides
BWI76_RS04640: BWI76_RS04640 - LysR family transcriptional regulator, at 966,808 to 967,704
_RS04640
BWI76_RS04645: BWI76_RS04645 - 3-dehydroquinase, at 967,742 to 968,497
_RS04645
BWI76_RS04650: BWI76_RS04650 - MFS transporter, at 968,531 to 969,745
_RS04650
BWI76_RS04655: BWI76_RS04655 - shikimate dehydrogenase, at 969,757 to 970,620
_RS04655
BWI76_RS04660: BWI76_RS04660 - 2,4-dienoyl-CoA reductase, at 970,631 to 972,664
_RS04660
Position (kb) 968
969
970 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 967.571 kb on + strand, within BWI76_RS04640 at 967.610 kb on + strand, within BWI76_RS04640 at 967.633 kb on - strand at 967.644 kb on + strand at 967.716 kb on + strand at 967.719 kb on - strand at 967.719 kb on - strand at 967.719 kb on - strand at 967.725 kb on - strand at 967.802 kb on + strand at 967.817 kb on + strand at 967.954 kb on - strand, within BWI76_RS04645 at 967.954 kb on - strand, within BWI76_RS04645 at 967.993 kb on + strand, within BWI76_RS04645 at 968.047 kb on - strand, within BWI76_RS04645 at 968.083 kb on - strand, within BWI76_RS04645 at 968.114 kb on - strand, within BWI76_RS04645 at 968.154 kb on - strand, within BWI76_RS04645 at 968.174 kb on + strand, within BWI76_RS04645 at 968.333 kb on - strand, within BWI76_RS04645 at 968.426 kb on + strand at 968.481 kb on - strand at 968.738 kb on + strand, within BWI76_RS04650 at 968.770 kb on - strand, within BWI76_RS04650 at 968.794 kb on - strand, within BWI76_RS04650 at 968.818 kb on - strand, within BWI76_RS04650 at 968.990 kb on - strand, within BWI76_RS04650 at 969.100 kb on + strand, within BWI76_RS04650 at 969.100 kb on + strand, within BWI76_RS04650 at 969.108 kb on - strand, within BWI76_RS04650 at 969.137 kb on - strand, within BWI76_RS04650 at 969.272 kb on + strand, within BWI76_RS04650 at 969.347 kb on - strand, within BWI76_RS04650 at 969.347 kb on - strand, within BWI76_RS04650 at 969.347 kb on - strand, within BWI76_RS04650 at 969.352 kb on + strand, within BWI76_RS04650 at 969.662 kb on - strand at 969.778 kb on - strand at 969.825 kb on + strand at 969.825 kb on + strand at 969.921 kb on + strand, within BWI76_RS04655 at 970.025 kb on - strand at 970.287 kb on - strand, within BWI76_RS04655 at 970.356 kb on + strand, within BWI76_RS04655 at 970.458 kb on - strand, within BWI76_RS04655 at 970.545 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KLEB16 MOI 0.1 remove 967,571 + BWI76_RS04640 0.85 -0.3 967,610 + BWI76_RS04640 0.89 +0.3 967,633 - -0.5 967,644 + +0.5 967,716 + -0.7 967,719 - +0.5 967,719 - -2.0 967,719 - +0.8 967,725 - +0.6 967,802 + -1.3 967,817 + +1.0 967,954 - BWI76_RS04645 0.28 -3.9 967,954 - BWI76_RS04645 0.28 +0.0 967,993 + BWI76_RS04645 0.33 +0.2 968,047 - BWI76_RS04645 0.40 -0.5 968,083 - BWI76_RS04645 0.45 -1.3 968,114 - BWI76_RS04645 0.49 -0.5 968,154 - BWI76_RS04645 0.54 -1.0 968,174 + BWI76_RS04645 0.57 -1.0 968,333 - BWI76_RS04645 0.78 -0.3 968,426 + -1.3 968,481 - -1.0 968,738 + BWI76_RS04650 0.17 -0.4 968,770 - BWI76_RS04650 0.20 +0.5 968,794 - BWI76_RS04650 0.22 -1.4 968,818 - BWI76_RS04650 0.24 +0.1 968,990 - BWI76_RS04650 0.38 +0.3 969,100 + BWI76_RS04650 0.47 -1.0 969,100 + BWI76_RS04650 0.47 +0.3 969,108 - BWI76_RS04650 0.47 +0.6 969,137 - BWI76_RS04650 0.50 +0.2 969,272 + BWI76_RS04650 0.61 +0.6 969,347 - BWI76_RS04650 0.67 +1.6 969,347 - BWI76_RS04650 0.67 +2.2 969,347 - BWI76_RS04650 0.67 +0.5 969,352 + BWI76_RS04650 0.68 -0.6 969,662 - +0.1 969,778 - -0.4 969,825 + +0.8 969,825 + -2.4 969,921 + BWI76_RS04655 0.19 -0.2 970,025 - +0.6 970,287 - BWI76_RS04655 0.61 -1.5 970,356 + BWI76_RS04655 0.69 +1.2 970,458 - BWI76_RS04655 0.81 +0.3 970,545 - +0.9
Or see this region's nucleotide sequence