Experiment: KLEB16 MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS04825 and BWI76_RS04830 are separated by 29 nucleotides BWI76_RS04830 and BWI76_RS04835 overlap by 11 nucleotides
BWI76_RS04825: BWI76_RS04825 - guanosine monophosphate reductase, at 1,007,737 to 1,008,780
_RS04825
BWI76_RS04830: BWI76_RS04830 - type IV pilin biogenesis protein, at 1,008,810 to 1,010,015
_RS04830
BWI76_RS04835: BWI76_RS04835 - type II secretion system protein GspE, at 1,010,005 to 1,011,390
_RS04835
Position (kb)
1008
1009
1010
1011 Strain fitness (log2 ratio)
-2
-1
0
1 at 1007.852 kb on + strand, within BWI76_RS04825 at 1007.862 kb on + strand, within BWI76_RS04825 at 1007.862 kb on + strand, within BWI76_RS04825 at 1007.903 kb on - strand, within BWI76_RS04825 at 1007.967 kb on + strand at 1007.983 kb on - strand, within BWI76_RS04825 at 1008.029 kb on + strand, within BWI76_RS04825 at 1008.037 kb on - strand, within BWI76_RS04825 at 1008.331 kb on - strand, within BWI76_RS04825 at 1008.531 kb on + strand, within BWI76_RS04825 at 1008.539 kb on - strand, within BWI76_RS04825 at 1008.578 kb on + strand, within BWI76_RS04825 at 1008.583 kb on + strand, within BWI76_RS04825 at 1008.878 kb on - strand at 1009.028 kb on + strand, within BWI76_RS04830 at 1009.028 kb on + strand, within BWI76_RS04830 at 1009.267 kb on + strand, within BWI76_RS04830 at 1009.418 kb on + strand, within BWI76_RS04830 at 1009.480 kb on + strand, within BWI76_RS04830 at 1009.486 kb on + strand, within BWI76_RS04830 at 1009.562 kb on - strand, within BWI76_RS04830 at 1009.712 kb on + strand, within BWI76_RS04830 at 1009.714 kb on + strand, within BWI76_RS04830 at 1009.777 kb on + strand, within BWI76_RS04830 at 1009.868 kb on - strand, within BWI76_RS04830 at 1010.247 kb on - strand, within BWI76_RS04835 at 1010.279 kb on - strand, within BWI76_RS04835 at 1010.289 kb on - strand, within BWI76_RS04835 at 1010.591 kb on + strand, within BWI76_RS04835 at 1010.797 kb on - strand, within BWI76_RS04835 at 1010.836 kb on - strand, within BWI76_RS04835
Per-strain Table
Position Strand Gene LocusTag Fraction KLEB16 MOI 0.1 remove 1,007,852 + BWI76_RS04825 0.11 +0.8 1,007,862 + BWI76_RS04825 0.12 -0.5 1,007,862 + BWI76_RS04825 0.12 +0.1 1,007,903 - BWI76_RS04825 0.16 -0.6 1,007,967 + +0.9 1,007,983 - BWI76_RS04825 0.24 -0.8 1,008,029 + BWI76_RS04825 0.28 +0.6 1,008,037 - BWI76_RS04825 0.29 -0.8 1,008,331 - BWI76_RS04825 0.57 +0.4 1,008,531 + BWI76_RS04825 0.76 +0.4 1,008,539 - BWI76_RS04825 0.77 +0.1 1,008,578 + BWI76_RS04825 0.81 +0.9 1,008,583 + BWI76_RS04825 0.81 +0.3 1,008,878 - -0.1 1,009,028 + BWI76_RS04830 0.18 -1.8 1,009,028 + BWI76_RS04830 0.18 +0.9 1,009,267 + BWI76_RS04830 0.38 +0.1 1,009,418 + BWI76_RS04830 0.50 +0.4 1,009,480 + BWI76_RS04830 0.56 +0.6 1,009,486 + BWI76_RS04830 0.56 -0.5 1,009,562 - BWI76_RS04830 0.62 +0.5 1,009,712 + BWI76_RS04830 0.75 +0.2 1,009,714 + BWI76_RS04830 0.75 -0.0 1,009,777 + BWI76_RS04830 0.80 +0.1 1,009,868 - BWI76_RS04830 0.88 +0.8 1,010,247 - BWI76_RS04835 0.17 +0.7 1,010,279 - BWI76_RS04835 0.20 -0.5 1,010,289 - BWI76_RS04835 0.20 -0.0 1,010,591 + BWI76_RS04835 0.42 -0.2 1,010,797 - BWI76_RS04835 0.57 +0.0 1,010,836 - BWI76_RS04835 0.60 +0.0
Or see this region's nucleotide sequence