Experiment: KLEB16 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS20185 and BWI76_RS20190 are separated by 15 nucleotides BWI76_RS20190 and BWI76_RS20195 overlap by 23 nucleotides BWI76_RS20195 and BWI76_RS20200 are separated by 463 nucleotides
BWI76_RS20185: BWI76_RS20185 - NADH-quinone oxidoreductase subunit B, at 4,230,862 to 4,231,536
_RS20185
BWI76_RS20190: BWI76_RS20190 - NADH-quinone oxidoreductase subunit A, at 4,231,552 to 4,231,998
_RS20190
BWI76_RS20195: BWI76_RS20195 - hypothetical protein, at 4,231,976 to 4,232,186
_RS20195
BWI76_RS20200: BWI76_RS20200 - transcriptional regulator LrhA, at 4,232,650 to 4,233,576
_RS20200
Position (kb) 4231
4232
4233 Strain fitness (log2 ratio) -1
0
1
2 at 4231.087 kb on + strand, within BWI76_RS20185 at 4231.302 kb on - strand at 4231.557 kb on + strand at 4231.565 kb on - strand at 4231.591 kb on - strand at 4231.657 kb on - strand, within BWI76_RS20190 at 4231.908 kb on + strand, within BWI76_RS20190 at 4231.926 kb on - strand, within BWI76_RS20190 at 4232.281 kb on - strand at 4232.334 kb on - strand at 4232.434 kb on - strand at 4232.691 kb on - strand at 4232.705 kb on - strand at 4232.874 kb on + strand, within BWI76_RS20200 at 4232.962 kb on - strand, within BWI76_RS20200 at 4232.962 kb on - strand, within BWI76_RS20200 at 4233.128 kb on - strand, within BWI76_RS20200 at 4233.134 kb on + strand, within BWI76_RS20200 at 4233.135 kb on - strand, within BWI76_RS20200
Per-strain Table
Position Strand Gene LocusTag Fraction KLEB16 MOI 1 remove 4,231,087 + BWI76_RS20185 0.33 +1.1 4,231,302 - -1.5 4,231,557 + -1.2 4,231,565 - -0.1 4,231,591 - -0.3 4,231,657 - BWI76_RS20190 0.23 -0.1 4,231,908 + BWI76_RS20190 0.80 -0.7 4,231,926 - BWI76_RS20190 0.84 -0.1 4,232,281 - -1.6 4,232,334 - -1.5 4,232,434 - +0.8 4,232,691 - +0.5 4,232,705 - +1.2 4,232,874 + BWI76_RS20200 0.24 -0.1 4,232,962 - BWI76_RS20200 0.34 +1.6 4,232,962 - BWI76_RS20200 0.34 +1.9 4,233,128 - BWI76_RS20200 0.52 +0.8 4,233,134 + BWI76_RS20200 0.52 +0.9 4,233,135 - BWI76_RS20200 0.52 +0.9
Or see this region's nucleotide sequence