Experiment: KLEB16 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS17335 and BWI76_RS17340 are separated by 396 nucleotides BWI76_RS17340 and BWI76_RS17345 are separated by 311 nucleotides
BWI76_RS17335: BWI76_RS17335 - nitrate reductase subunit alpha, at 3,588,308 to 3,592,051
_RS17335
BWI76_RS17340: BWI76_RS17340 - NarK family nitrate/nitrite MFS transporter, at 3,592,448 to 3,593,836
_RS17340
BWI76_RS17345: BWI76_RS17345 - nitrate/nitrite two-component system sensor histidine kinase NarX, at 3,594,148 to 3,595,926
_RS17345
Position (kb)
3592
3593
3594 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3591.522 kb on + strand, within BWI76_RS17335 at 3591.916 kb on + strand at 3591.958 kb on + strand at 3592.001 kb on + strand at 3592.009 kb on - strand at 3592.054 kb on + strand at 3592.054 kb on + strand at 3592.061 kb on + strand at 3592.064 kb on + strand at 3592.069 kb on - strand at 3592.071 kb on + strand at 3592.079 kb on - strand at 3592.080 kb on - strand at 3592.087 kb on - strand at 3592.116 kb on + strand at 3592.286 kb on + strand at 3592.311 kb on + strand at 3592.319 kb on - strand at 3592.344 kb on + strand at 3592.461 kb on + strand at 3592.471 kb on - strand at 3592.471 kb on - strand at 3592.502 kb on - strand at 3592.505 kb on - strand at 3592.541 kb on + strand at 3592.549 kb on - strand at 3592.549 kb on - strand at 3592.549 kb on - strand at 3592.634 kb on + strand, within BWI76_RS17340 at 3592.652 kb on + strand, within BWI76_RS17340 at 3592.711 kb on + strand, within BWI76_RS17340 at 3592.747 kb on + strand, within BWI76_RS17340 at 3593.089 kb on - strand, within BWI76_RS17340 at 3593.420 kb on - strand, within BWI76_RS17340 at 3593.531 kb on - strand, within BWI76_RS17340 at 3593.832 kb on + strand at 3593.842 kb on + strand at 3594.265 kb on + strand at 3594.273 kb on - strand at 3594.325 kb on - strand at 3594.618 kb on + strand, within BWI76_RS17345
Per-strain Table
Position Strand Gene LocusTag Fraction KLEB16 MOI 1 remove 3,591,522 + BWI76_RS17335 0.86 -0.6 3,591,916 + -1.8 3,591,958 + +0.8 3,592,001 + +0.2 3,592,009 - +0.9 3,592,054 + -0.1 3,592,054 + +0.2 3,592,061 + +1.5 3,592,064 + +0.4 3,592,069 - -0.4 3,592,071 + -1.7 3,592,079 - -0.6 3,592,080 - -0.6 3,592,087 - +0.4 3,592,116 + +0.1 3,592,286 + +0.3 3,592,311 + +0.9 3,592,319 - +1.8 3,592,344 + -1.1 3,592,461 + +0.3 3,592,471 - +0.4 3,592,471 - +0.5 3,592,502 - +0.8 3,592,505 - +1.0 3,592,541 + +2.0 3,592,549 - -0.1 3,592,549 - +1.8 3,592,549 - -2.1 3,592,634 + BWI76_RS17340 0.13 +0.5 3,592,652 + BWI76_RS17340 0.15 +0.3 3,592,711 + BWI76_RS17340 0.19 +1.0 3,592,747 + BWI76_RS17340 0.22 +0.7 3,593,089 - BWI76_RS17340 0.46 +1.4 3,593,420 - BWI76_RS17340 0.70 -0.1 3,593,531 - BWI76_RS17340 0.78 -2.9 3,593,832 + -0.0 3,593,842 + -0.3 3,594,265 + -0.3 3,594,273 - -0.3 3,594,325 - +0.1 3,594,618 + BWI76_RS17345 0.26 -0.2
Or see this region's nucleotide sequence