Experiment: KLEB16 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS10990 and BWI76_RS10995 are separated by 122 nucleotides BWI76_RS10995 and BWI76_RS11000 are separated by 135 nucleotides BWI76_RS11000 and BWI76_RS11005 are separated by 65 nucleotides
BWI76_RS10990: BWI76_RS10990 - dihydroorotase, at 2,318,330 to 2,319,376
_RS10990
BWI76_RS10995: BWI76_RS10995 - lipoprotein, at 2,319,499 to 2,320,059
_RS10995
BWI76_RS11000: BWI76_RS11000 - glutaredoxin 2, at 2,320,195 to 2,320,842
_RS11000
BWI76_RS11005: BWI76_RS11005 - MFS transporter, at 2,320,908 to 2,322,116
_RS11005
Position (kb)
2319
2320
2321 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2318.567 kb on + strand at 2318.866 kb on - strand, within BWI76_RS10990 at 2319.099 kb on - strand, within BWI76_RS10990 at 2319.372 kb on + strand at 2319.431 kb on + strand at 2319.761 kb on + strand, within BWI76_RS10995 at 2319.769 kb on - strand, within BWI76_RS10995 at 2319.838 kb on - strand, within BWI76_RS10995 at 2319.947 kb on - strand, within BWI76_RS10995 at 2319.989 kb on + strand, within BWI76_RS10995 at 2320.007 kb on + strand at 2320.007 kb on - strand at 2320.020 kb on - strand at 2320.176 kb on + strand at 2320.363 kb on - strand at 2320.363 kb on - strand, within BWI76_RS11000 at 2320.742 kb on + strand, within BWI76_RS11000 at 2320.744 kb on + strand, within BWI76_RS11000 at 2320.761 kb on + strand, within BWI76_RS11000 at 2320.808 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KLEB16 MOI 1 remove 2,318,567 + +3.3 2,318,866 - BWI76_RS10990 0.51 +0.2 2,319,099 - BWI76_RS10990 0.73 +0.9 2,319,372 + +0.3 2,319,431 + +0.4 2,319,761 + BWI76_RS10995 0.47 +0.3 2,319,769 - BWI76_RS10995 0.48 +2.7 2,319,838 - BWI76_RS10995 0.60 +0.3 2,319,947 - BWI76_RS10995 0.80 +0.6 2,319,989 + BWI76_RS10995 0.87 +0.6 2,320,007 + +2.0 2,320,007 - +0.6 2,320,020 - -1.2 2,320,176 + +0.7 2,320,363 - +0.7 2,320,363 - BWI76_RS11000 0.26 +1.4 2,320,742 + BWI76_RS11000 0.84 +0.1 2,320,744 + BWI76_RS11000 0.85 +0.2 2,320,761 + BWI76_RS11000 0.87 -0.8 2,320,808 - +2.7
Or see this region's nucleotide sequence