Experiment: KLEB16 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS00890 and BWI76_RS00895 overlap by 56 nucleotides BWI76_RS00895 and BWI76_RS00900 overlap by 20 nucleotides BWI76_RS00900 and BWI76_RS00905 are separated by 126 nucleotides
BWI76_RS00890: BWI76_RS00890 - vitamin B12/cobalamin outer membrane transporter, at 183,449 to 185,317
_RS00890
BWI76_RS00895: BWI76_RS00895 - glutamate racemase, at 185,262 to 186,116
_RS00895
BWI76_RS00900: BWI76_RS00900 - hypothetical protein, at 186,097 to 186,364
_RS00900
BWI76_RS00905: BWI76_RS00905 - 16S ribosomal RNA, at 186,491 to 188,044
_RS00905
Position (kb) 185
186
187 Strain fitness (log2 ratio) -1
0
1 at 184.282 kb on + strand, within BWI76_RS00890 at 184.290 kb on + strand, within BWI76_RS00890 at 184.297 kb on + strand, within BWI76_RS00890 at 184.334 kb on - strand, within BWI76_RS00890 at 184.390 kb on + strand, within BWI76_RS00890 at 184.445 kb on + strand, within BWI76_RS00890 at 184.448 kb on - strand, within BWI76_RS00890 at 184.448 kb on - strand, within BWI76_RS00890 at 184.625 kb on + strand, within BWI76_RS00890 at 184.680 kb on + strand, within BWI76_RS00890 at 184.708 kb on - strand, within BWI76_RS00890 at 184.779 kb on - strand, within BWI76_RS00890 at 184.855 kb on + strand, within BWI76_RS00890 at 184.855 kb on + strand, within BWI76_RS00890 at 184.860 kb on + strand, within BWI76_RS00890 at 184.938 kb on - strand, within BWI76_RS00890 at 184.990 kb on + strand, within BWI76_RS00890 at 185.061 kb on - strand, within BWI76_RS00890 at 185.095 kb on + strand, within BWI76_RS00890 at 185.156 kb on - strand at 185.169 kb on + strand at 185.258 kb on + strand at 186.174 kb on + strand, within BWI76_RS00900
Per-strain Table
Position Strand Gene LocusTag Fraction KLEB16 MOI 1 remove 184,282 + BWI76_RS00890 0.45 -0.3 184,290 + BWI76_RS00890 0.45 -0.4 184,297 + BWI76_RS00890 0.45 +0.4 184,334 - BWI76_RS00890 0.47 +0.1 184,390 + BWI76_RS00890 0.50 -0.1 184,445 + BWI76_RS00890 0.53 +0.5 184,448 - BWI76_RS00890 0.53 -0.2 184,448 - BWI76_RS00890 0.53 -0.1 184,625 + BWI76_RS00890 0.63 +0.7 184,680 + BWI76_RS00890 0.66 -0.2 184,708 - BWI76_RS00890 0.67 -0.1 184,779 - BWI76_RS00890 0.71 -0.0 184,855 + BWI76_RS00890 0.75 +0.4 184,855 + BWI76_RS00890 0.75 +0.5 184,860 + BWI76_RS00890 0.75 -0.5 184,938 - BWI76_RS00890 0.80 -1.4 184,990 + BWI76_RS00890 0.82 +1.3 185,061 - BWI76_RS00890 0.86 -1.2 185,095 + BWI76_RS00890 0.88 +0.1 185,156 - -0.9 185,169 + -1.3 185,258 + +1.1 186,174 + BWI76_RS00900 0.29 +0.6
Or see this region's nucleotide sequence