Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS16575

Experiment: KLEB15 MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS16565 and BWI76_RS16570 are separated by 19 nucleotidesBWI76_RS16570 and BWI76_RS16575 are separated by 71 nucleotidesBWI76_RS16575 and BWI76_RS16580 overlap by 1 nucleotides BWI76_RS16565: BWI76_RS16565 - YciE/YciF family protein, at 3,431,165 to 3,431,671 _RS16565 BWI76_RS16570: BWI76_RS16570 - catalase, at 3,431,691 to 3,432,563 _RS16570 BWI76_RS16575: BWI76_RS16575 - cytochrome ubiquinol oxidase subunit I, at 3,432,635 to 3,434,038 _RS16575 BWI76_RS16580: BWI76_RS16580 - ubiquinol oxidase subunit II, at 3,434,038 to 3,435,048 _RS16580 Position (kb) 3432 3433 3434 3435Strain fitness (log2 ratio) -3 -2 -1 0 1at 3431.648 kb on + strandat 3431.712 kb on + strandat 3431.783 kb on + strand, within BWI76_RS16570at 3431.792 kb on - strand, within BWI76_RS16570at 3431.825 kb on + strand, within BWI76_RS16570at 3431.984 kb on - strand, within BWI76_RS16570at 3432.079 kb on - strand, within BWI76_RS16570at 3432.204 kb on - strand, within BWI76_RS16570at 3432.481 kb on - strandat 3432.481 kb on - strandat 3432.481 kb on - strandat 3432.609 kb on - strandat 3432.610 kb on + strandat 3432.659 kb on - strandat 3432.761 kb on - strandat 3432.876 kb on - strand, within BWI76_RS16575at 3433.005 kb on + strand, within BWI76_RS16575at 3433.136 kb on + strand, within BWI76_RS16575at 3433.334 kb on - strandat 3433.826 kb on - strand, within BWI76_RS16575at 3433.837 kb on + strand, within BWI76_RS16575at 3433.885 kb on + strand, within BWI76_RS16575at 3433.893 kb on - strand, within BWI76_RS16575at 3434.224 kb on - strand, within BWI76_RS16580at 3434.417 kb on + strand, within BWI76_RS16580at 3434.425 kb on - strand, within BWI76_RS16580at 3434.464 kb on - strand, within BWI76_RS16580at 3434.785 kb on - strand, within BWI76_RS16580at 3434.796 kb on + strand, within BWI76_RS16580at 3434.990 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KLEB15 MOI 0.1
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3,431,648 + -0.2
3,431,712 + -0.4
3,431,783 + BWI76_RS16570 0.11 +1.2
3,431,792 - BWI76_RS16570 0.12 -0.1
3,431,825 + BWI76_RS16570 0.15 -0.3
3,431,984 - BWI76_RS16570 0.34 -0.6
3,432,079 - BWI76_RS16570 0.44 -3.0
3,432,204 - BWI76_RS16570 0.59 -1.0
3,432,481 - +0.1
3,432,481 - -0.1
3,432,481 - +0.3
3,432,609 - +0.4
3,432,610 + -0.9
3,432,659 - +1.2
3,432,761 - -0.4
3,432,876 - BWI76_RS16575 0.17 -2.8
3,433,005 + BWI76_RS16575 0.26 -1.2
3,433,136 + BWI76_RS16575 0.36 -0.3
3,433,334 - +1.3
3,433,826 - BWI76_RS16575 0.85 -1.5
3,433,837 + BWI76_RS16575 0.86 +0.3
3,433,885 + BWI76_RS16575 0.89 -0.6
3,433,893 - BWI76_RS16575 0.90 -1.0
3,434,224 - BWI76_RS16580 0.18 +0.8
3,434,417 + BWI76_RS16580 0.37 +0.0
3,434,425 - BWI76_RS16580 0.38 +0.3
3,434,464 - BWI76_RS16580 0.42 -0.4
3,434,785 - BWI76_RS16580 0.74 +0.1
3,434,796 + BWI76_RS16580 0.75 +0.6
3,434,990 - +0.5

Or see this region's nucleotide sequence