Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS06640

Experiment: KLEB15 MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS06630 and BWI76_RS06635 are separated by 37 nucleotidesBWI76_RS06635 and BWI76_RS06640 are separated by 65 nucleotidesBWI76_RS06640 and BWI76_RS06650 are separated by 661 nucleotidesBWI76_RS06650 and BWI76_RS06655 overlap by 4 nucleotides BWI76_RS06630: BWI76_RS06630 - hypothetical protein, at 1,394,032 to 1,394,541 _RS06630 BWI76_RS06635: BWI76_RS06635 - methylated-DNA--protein-cysteine methyltransferase, at 1,394,579 to 1,394,890 _RS06635 BWI76_RS06640: BWI76_RS06640 - hypothetical protein, at 1,394,956 to 1,395,363 _RS06640 BWI76_RS06650: BWI76_RS06650 - hypothetical protein, at 1,396,025 to 1,396,282 _RS06650 BWI76_RS06655: BWI76_RS06655 - hypothetical protein, at 1,396,279 to 1,396,494 _RS06655 Position (kb) 1394 1395 1396Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1393.992 kb on + strandat 1394.151 kb on + strand, within BWI76_RS06630at 1394.325 kb on + strand, within BWI76_RS06630at 1394.387 kb on + strand, within BWI76_RS06630at 1394.439 kb on - strand, within BWI76_RS06630at 1394.531 kb on - strandat 1394.627 kb on + strand, within BWI76_RS06635at 1394.735 kb on + strand, within BWI76_RS06635at 1394.744 kb on - strand, within BWI76_RS06635at 1395.082 kb on - strand, within BWI76_RS06640at 1395.101 kb on + strand, within BWI76_RS06640at 1395.192 kb on + strand, within BWI76_RS06640at 1395.192 kb on + strand, within BWI76_RS06640at 1395.197 kb on + strand, within BWI76_RS06640at 1395.197 kb on + strand, within BWI76_RS06640at 1395.210 kb on - strand, within BWI76_RS06640at 1395.224 kb on - strand, within BWI76_RS06640at 1395.328 kb on + strandat 1395.336 kb on - strandat 1395.718 kb on + strandat 1395.732 kb on + strandat 1395.758 kb on + strandat 1395.766 kb on - strandat 1395.766 kb on - strandat 1395.904 kb on - strandat 1395.938 kb on + strandat 1396.022 kb on + strandat 1396.022 kb on + strandat 1396.022 kb on + strandat 1396.022 kb on + strandat 1396.022 kb on + strandat 1396.023 kb on + strandat 1396.027 kb on + strandat 1396.030 kb on - strandat 1396.030 kb on - strandat 1396.030 kb on - strandat 1396.032 kb on + strandat 1396.032 kb on + strandat 1396.035 kb on - strandat 1396.037 kb on + strandat 1396.037 kb on + strandat 1396.040 kb on - strandat 1396.124 kb on + strand, within BWI76_RS06650at 1396.124 kb on - strand, within BWI76_RS06650at 1396.130 kb on + strand, within BWI76_RS06650at 1396.135 kb on + strand, within BWI76_RS06650at 1396.135 kb on + strand, within BWI76_RS06650at 1396.135 kb on + strand, within BWI76_RS06650at 1396.135 kb on + strand, within BWI76_RS06650at 1396.135 kb on + strand, within BWI76_RS06650at 1396.135 kb on + strand, within BWI76_RS06650at 1396.135 kb on + strand, within BWI76_RS06650at 1396.136 kb on + strand, within BWI76_RS06650at 1396.136 kb on + strand, within BWI76_RS06650at 1396.136 kb on + strand, within BWI76_RS06650at 1396.136 kb on + strand, within BWI76_RS06650at 1396.136 kb on + strand, within BWI76_RS06650at 1396.136 kb on + strand, within BWI76_RS06650at 1396.136 kb on + strand, within BWI76_RS06650at 1396.136 kb on + strand, within BWI76_RS06650at 1396.136 kb on + strandat 1396.136 kb on + strand, within BWI76_RS06650at 1396.136 kb on + strand, within BWI76_RS06650at 1396.136 kb on + strand, within BWI76_RS06650at 1396.136 kb on + strand, within BWI76_RS06650at 1396.136 kb on + strandat 1396.136 kb on + strand, within BWI76_RS06650at 1396.136 kb on + strand, within BWI76_RS06650at 1396.136 kb on + strand, within BWI76_RS06650at 1396.136 kb on + strand, within BWI76_RS06650at 1396.136 kb on + strand, within BWI76_RS06650at 1396.144 kb on - strand, within BWI76_RS06650at 1396.144 kb on - strand, within BWI76_RS06650at 1396.144 kb on - strand, within BWI76_RS06650at 1396.170 kb on + strand, within BWI76_RS06650at 1396.170 kb on + strand, within BWI76_RS06650at 1396.178 kb on - strand, within BWI76_RS06650at 1396.178 kb on - strand, within BWI76_RS06650at 1396.179 kb on - strand, within BWI76_RS06650at 1396.194 kb on + strand, within BWI76_RS06650at 1396.204 kb on + strand, within BWI76_RS06650at 1396.204 kb on + strand, within BWI76_RS06650at 1396.293 kb on + strandat 1396.293 kb on + strandat 1396.301 kb on - strand, within BWI76_RS06655at 1396.301 kb on - strand, within BWI76_RS06655at 1396.301 kb on - strand, within BWI76_RS06655at 1396.308 kb on + strand, within BWI76_RS06655at 1396.316 kb on - strand, within BWI76_RS06655at 1396.316 kb on - strand, within BWI76_RS06655at 1396.318 kb on + strand, within BWI76_RS06655at 1396.318 kb on + strand, within BWI76_RS06655at 1396.318 kb on + strand, within BWI76_RS06655at 1396.318 kb on + strand, within BWI76_RS06655at 1396.318 kb on + strand, within BWI76_RS06655at 1396.318 kb on + strand, within BWI76_RS06655at 1396.318 kb on + strand, within BWI76_RS06655at 1396.318 kb on + strand, within BWI76_RS06655at 1396.318 kb on + strand, within BWI76_RS06655at 1396.318 kb on + strand, within BWI76_RS06655at 1396.318 kb on + strand, within BWI76_RS06655at 1396.326 kb on - strand, within BWI76_RS06655at 1396.326 kb on - strandat 1396.326 kb on - strand, within BWI76_RS06655at 1396.326 kb on - strand, within BWI76_RS06655at 1396.326 kb on - strand, within BWI76_RS06655at 1396.326 kb on - strand, within BWI76_RS06655at 1396.326 kb on - strandat 1396.326 kb on - strandat 1396.326 kb on - strand, within BWI76_RS06655at 1396.327 kb on + strand, within BWI76_RS06655at 1396.329 kb on + strand, within BWI76_RS06655at 1396.329 kb on + strand, within BWI76_RS06655at 1396.332 kb on + strand, within BWI76_RS06655at 1396.335 kb on - strand, within BWI76_RS06655at 1396.337 kb on - strand, within BWI76_RS06655at 1396.337 kb on - strandat 1396.350 kb on + strand, within BWI76_RS06655at 1396.352 kb on + strand, within BWI76_RS06655at 1396.352 kb on - strand, within BWI76_RS06655at 1396.353 kb on + strand, within BWI76_RS06655at 1396.357 kb on + strand, within BWI76_RS06655at 1396.360 kb on - strand, within BWI76_RS06655

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Per-strain Table

Position Strand Gene LocusTag Fraction KLEB15 MOI 0.1
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1,393,992 + +0.1
1,394,151 + BWI76_RS06630 0.23 -0.0
1,394,325 + BWI76_RS06630 0.57 -1.0
1,394,387 + BWI76_RS06630 0.70 -0.8
1,394,439 - BWI76_RS06630 0.80 -0.6
1,394,531 - -0.8
1,394,627 + BWI76_RS06635 0.15 +0.2
1,394,735 + BWI76_RS06635 0.50 -1.2
1,394,744 - BWI76_RS06635 0.53 +0.6
1,395,082 - BWI76_RS06640 0.31 -0.5
1,395,101 + BWI76_RS06640 0.36 -0.2
1,395,192 + BWI76_RS06640 0.58 -1.9
1,395,192 + BWI76_RS06640 0.58 -0.9
1,395,197 + BWI76_RS06640 0.59 -0.8
1,395,197 + BWI76_RS06640 0.59 -0.1
1,395,210 - BWI76_RS06640 0.62 -1.2
1,395,224 - BWI76_RS06640 0.66 -1.2
1,395,328 + +4.1
1,395,336 - +0.3
1,395,718 + -0.2
1,395,732 + -0.7
1,395,758 + -1.2
1,395,766 - +0.7
1,395,766 - -0.2
1,395,904 - +0.9
1,395,938 + -0.5
1,396,022 + +1.0
1,396,022 + +2.6
1,396,022 + -1.0
1,396,022 + -0.5
1,396,022 + +0.3
1,396,023 + -1.1
1,396,027 + +0.6
1,396,030 - -0.2
1,396,030 - -1.2
1,396,030 - -2.1
1,396,032 + -0.8
1,396,032 + +1.2
1,396,035 - -0.8
1,396,037 + -0.4
1,396,037 + +0.2
1,396,040 - +1.4
1,396,124 + BWI76_RS06650 0.38 -0.5
1,396,124 - BWI76_RS06650 0.38 -0.5
1,396,130 + BWI76_RS06650 0.41 -0.7
1,396,135 + BWI76_RS06650 0.43 +0.1
1,396,135 + BWI76_RS06650 0.43 +0.5
1,396,135 + BWI76_RS06650 0.43 -0.3
1,396,135 + BWI76_RS06650 0.43 +0.6
1,396,135 + BWI76_RS06650 0.43 -0.2
1,396,135 + BWI76_RS06650 0.43 +0.8
1,396,135 + BWI76_RS06650 0.43 +0.8
1,396,136 + BWI76_RS06650 0.43 +0.8
1,396,136 + BWI76_RS06650 0.43 -1.3
1,396,136 + BWI76_RS06650 0.43 +0.1
1,396,136 + BWI76_RS06650 0.43 -0.8
1,396,136 + BWI76_RS06650 0.43 -0.6
1,396,136 + BWI76_RS06650 0.43 -0.8
1,396,136 + BWI76_RS06650 0.43 +2.2
1,396,136 + BWI76_RS06650 0.43 -0.0
1,396,136 + -1.2
1,396,136 + BWI76_RS06650 0.43 -1.0
1,396,136 + BWI76_RS06650 0.43 +0.7
1,396,136 + BWI76_RS06650 0.43 -0.2
1,396,136 + BWI76_RS06650 0.43 -1.8
1,396,136 + -1.0
1,396,136 + BWI76_RS06650 0.43 +0.1
1,396,136 + BWI76_RS06650 0.43 -1.0
1,396,136 + BWI76_RS06650 0.43 +0.0
1,396,136 + BWI76_RS06650 0.43 -3.1
1,396,136 + BWI76_RS06650 0.43 -0.5
1,396,144 - BWI76_RS06650 0.46 +0.2
1,396,144 - BWI76_RS06650 0.46 -0.0
1,396,144 - BWI76_RS06650 0.46 -1.2
1,396,170 + BWI76_RS06650 0.56 -1.9
1,396,170 + BWI76_RS06650 0.56 -0.9
1,396,178 - BWI76_RS06650 0.59 -1.8
1,396,178 - BWI76_RS06650 0.59 -0.1
1,396,179 - BWI76_RS06650 0.60 -0.9
1,396,194 + BWI76_RS06650 0.66 +0.3
1,396,204 + BWI76_RS06650 0.69 -2.2
1,396,204 + BWI76_RS06650 0.69 -3.1
1,396,293 + -0.4
1,396,293 + -1.0
1,396,301 - BWI76_RS06655 0.10 +1.1
1,396,301 - BWI76_RS06655 0.10 +0.4
1,396,301 - BWI76_RS06655 0.10 +2.8
1,396,308 + BWI76_RS06655 0.13 -0.7
1,396,316 - BWI76_RS06655 0.17 -2.3
1,396,316 - BWI76_RS06655 0.17 +1.8
1,396,318 + BWI76_RS06655 0.18 -1.7
1,396,318 + BWI76_RS06655 0.18 -0.1
1,396,318 + BWI76_RS06655 0.18 -0.4
1,396,318 + BWI76_RS06655 0.18 -0.1
1,396,318 + BWI76_RS06655 0.18 -1.0
1,396,318 + BWI76_RS06655 0.18 -1.0
1,396,318 + BWI76_RS06655 0.18 +1.8
1,396,318 + BWI76_RS06655 0.18 -0.3
1,396,318 + BWI76_RS06655 0.18 -1.1
1,396,318 + BWI76_RS06655 0.18 -1.3
1,396,318 + BWI76_RS06655 0.18 +0.0
1,396,326 - BWI76_RS06655 0.22 +0.2
1,396,326 - +2.1
1,396,326 - BWI76_RS06655 0.22 +0.1
1,396,326 - BWI76_RS06655 0.22 +2.2
1,396,326 - BWI76_RS06655 0.22 -0.8
1,396,326 - BWI76_RS06655 0.22 +0.5
1,396,326 - -1.0
1,396,326 - -0.5
1,396,326 - BWI76_RS06655 0.22 +1.8
1,396,327 + BWI76_RS06655 0.22 +3.9
1,396,329 + BWI76_RS06655 0.23 +4.0
1,396,329 + BWI76_RS06655 0.23 -0.8
1,396,332 + BWI76_RS06655 0.25 +1.0
1,396,335 - BWI76_RS06655 0.26 -0.7
1,396,337 - BWI76_RS06655 0.27 -2.3
1,396,337 - -0.5
1,396,350 + BWI76_RS06655 0.33 +3.9
1,396,352 + BWI76_RS06655 0.34 +0.8
1,396,352 - BWI76_RS06655 0.34 +0.5
1,396,353 + BWI76_RS06655 0.34 +0.0
1,396,357 + BWI76_RS06655 0.36 +2.8
1,396,360 - BWI76_RS06655 0.38 -1.8

Or see this region's nucleotide sequence