Experiment: KLEB15 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS18660 and BWI76_RS18665 are separated by 10 nucleotides BWI76_RS18665 and BWI76_RS18670 are separated by 12 nucleotides BWI76_RS18670 and BWI76_RS18675 are separated by 17 nucleotides
BWI76_RS18660: BWI76_RS18660 - hypothetical protein, at 3,867,531 to 3,870,158
_RS18660
BWI76_RS18665: BWI76_RS18665 - hypothetical protein, at 3,870,169 to 3,870,696
_RS18665
BWI76_RS18670: BWI76_RS18670 - hypothetical protein, at 3,870,709 to 3,871,212
_RS18670
BWI76_RS18675: BWI76_RS18675 - fimbrial protein, at 3,871,230 to 3,872,135
_RS18675
Position (kb) 3870
3871
3872 Strain fitness (log2 ratio) -2
-1
0
1 at 3869.859 kb on - strand, within BWI76_RS18660 at 3869.908 kb on - strand at 3870.140 kb on + strand at 3870.808 kb on + strand, within BWI76_RS18670 at 3870.872 kb on + strand, within BWI76_RS18670 at 3871.055 kb on + strand, within BWI76_RS18670 at 3871.203 kb on - strand at 3871.203 kb on - strand at 3871.467 kb on - strand, within BWI76_RS18675 at 3871.598 kb on + strand, within BWI76_RS18675 at 3872.041 kb on + strand, within BWI76_RS18675 at 3872.121 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KLEB15 MOI 1 remove 3,869,859 - BWI76_RS18660 0.89 +0.2 3,869,908 - +0.2 3,870,140 + +1.4 3,870,808 + BWI76_RS18670 0.20 -0.4 3,870,872 + BWI76_RS18670 0.32 -0.6 3,871,055 + BWI76_RS18670 0.69 -1.1 3,871,203 - +0.2 3,871,203 - +0.1 3,871,467 - BWI76_RS18675 0.26 -1.8 3,871,598 + BWI76_RS18675 0.41 +0.8 3,872,041 + BWI76_RS18675 0.90 -0.3 3,872,121 - -0.1
Or see this region's nucleotide sequence