Experiment: KLEB15 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS18435 and BWI76_RS18440 are separated by 483 nucleotides BWI76_RS18440 and BWI76_RS18445 overlap by 4 nucleotides BWI76_RS18445 and BWI76_RS18450 overlap by 4 nucleotides
BWI76_RS18435: BWI76_RS18435 - porin, at 3,824,900 to 3,825,970
_RS18435
BWI76_RS18440: BWI76_RS18440 - GtrA-like protein, at 3,826,454 to 3,826,843
_RS18440
BWI76_RS18445: BWI76_RS18445 - glycosyltransferase, at 3,826,840 to 3,827,832
_RS18445
BWI76_RS18450: BWI76_RS18450 - hypothetical protein, at 3,827,829 to 3,829,286
_RS18450
Position (kb)
3826
3827
3828 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 3825.911 kb on + strand at 3825.919 kb on - strand at 3825.926 kb on + strand at 3825.940 kb on + strand at 3825.957 kb on - strand at 3825.962 kb on - strand at 3825.965 kb on - strand at 3825.984 kb on + strand at 3825.985 kb on + strand at 3826.022 kb on + strand at 3826.022 kb on + strand at 3826.022 kb on + strand at 3826.022 kb on + strand at 3826.022 kb on + strand at 3826.030 kb on - strand at 3826.030 kb on - strand at 3826.030 kb on - strand at 3826.030 kb on - strand at 3826.031 kb on - strand at 3826.044 kb on + strand at 3826.044 kb on - strand at 3826.044 kb on - strand at 3826.044 kb on - strand at 3826.044 kb on - strand at 3826.047 kb on + strand at 3826.047 kb on - strand at 3826.050 kb on + strand at 3826.058 kb on - strand at 3826.073 kb on - strand at 3826.073 kb on - strand at 3826.073 kb on - strand at 3826.073 kb on - strand at 3826.079 kb on - strand at 3826.114 kb on - strand at 3826.157 kb on - strand at 3826.177 kb on + strand at 3826.177 kb on + strand at 3826.177 kb on + strand at 3826.177 kb on + strand at 3826.177 kb on + strand at 3826.177 kb on + strand at 3826.185 kb on - strand at 3826.185 kb on - strand at 3826.185 kb on - strand at 3826.185 kb on - strand at 3826.185 kb on - strand at 3826.185 kb on - strand at 3826.185 kb on - strand at 3826.185 kb on - strand at 3826.185 kb on - strand at 3826.185 kb on - strand at 3826.185 kb on - strand at 3826.185 kb on - strand at 3826.185 kb on - strand at 3826.185 kb on - strand at 3826.185 kb on - strand at 3826.185 kb on - strand at 3826.185 kb on - strand at 3826.191 kb on + strand at 3826.199 kb on - strand at 3826.199 kb on - strand at 3826.202 kb on + strand at 3826.204 kb on + strand at 3826.205 kb on - strand at 3826.210 kb on - strand at 3826.210 kb on - strand at 3826.210 kb on - strand at 3826.210 kb on - strand at 3826.210 kb on - strand at 3826.226 kb on - strand at 3826.249 kb on - strand at 3826.255 kb on + strand at 3826.263 kb on - strand at 3826.289 kb on + strand at 3826.297 kb on - strand at 3826.297 kb on - strand at 3826.297 kb on - strand at 3826.297 kb on - strand at 3826.304 kb on - strand at 3826.346 kb on - strand at 3826.346 kb on - strand at 3826.346 kb on - strand at 3826.346 kb on - strand at 3826.346 kb on - strand at 3826.346 kb on - strand at 3826.346 kb on - strand at 3826.348 kb on + strand at 3826.348 kb on + strand at 3826.348 kb on + strand at 3826.348 kb on + strand at 3826.356 kb on - strand at 3826.356 kb on - strand at 3826.356 kb on - strand at 3826.356 kb on - strand at 3826.356 kb on - strand at 3826.356 kb on - strand at 3826.356 kb on - strand at 3826.356 kb on - strand at 3826.356 kb on - strand at 3826.356 kb on - strand at 3826.356 kb on - strand at 3826.356 kb on - strand at 3826.356 kb on - strand at 3826.356 kb on - strand at 3826.461 kb on + strand at 3826.468 kb on - strand at 3826.517 kb on - strand, within BWI76_RS18440 at 3826.519 kb on + strand, within BWI76_RS18440 at 3826.572 kb on - strand, within BWI76_RS18440 at 3826.574 kb on + strand, within BWI76_RS18440 at 3826.576 kb on + strand, within BWI76_RS18440 at 3826.576 kb on + strand, within BWI76_RS18440 at 3826.576 kb on + strand, within BWI76_RS18440 at 3826.582 kb on - strand, within BWI76_RS18440 at 3826.584 kb on - strand, within BWI76_RS18440 at 3826.584 kb on - strand, within BWI76_RS18440 at 3826.584 kb on - strand, within BWI76_RS18440 at 3826.598 kb on + strand, within BWI76_RS18440 at 3826.598 kb on + strand, within BWI76_RS18440 at 3826.598 kb on + strand, within BWI76_RS18440 at 3826.753 kb on + strand, within BWI76_RS18440 at 3826.761 kb on - strand, within BWI76_RS18440 at 3826.762 kb on + strand, within BWI76_RS18440 at 3826.770 kb on - strand, within BWI76_RS18440 at 3826.924 kb on + strand at 3826.928 kb on - strand at 3826.934 kb on + strand at 3826.942 kb on - strand, within BWI76_RS18445 at 3826.944 kb on + strand, within BWI76_RS18445 at 3827.122 kb on - strand, within BWI76_RS18445 at 3827.122 kb on - strand, within BWI76_RS18445 at 3827.122 kb on - strand, within BWI76_RS18445 at 3827.122 kb on - strand, within BWI76_RS18445 at 3827.122 kb on - strand, within BWI76_RS18445 at 3827.122 kb on - strand, within BWI76_RS18445 at 3827.122 kb on - strand at 3827.122 kb on - strand, within BWI76_RS18445 at 3827.176 kb on + strand, within BWI76_RS18445 at 3827.178 kb on + strand, within BWI76_RS18445 at 3827.178 kb on + strand, within BWI76_RS18445 at 3827.178 kb on + strand, within BWI76_RS18445 at 3827.188 kb on + strand, within BWI76_RS18445 at 3827.325 kb on + strand, within BWI76_RS18445 at 3827.341 kb on + strand, within BWI76_RS18445 at 3827.365 kb on - strand, within BWI76_RS18445 at 3827.566 kb on - strand, within BWI76_RS18445 at 3827.592 kb on + strand at 3827.593 kb on - strand, within BWI76_RS18445 at 3827.677 kb on + strand, within BWI76_RS18445 at 3827.683 kb on - strand, within BWI76_RS18445 at 3827.685 kb on - strand, within BWI76_RS18445 at 3827.857 kb on - strand at 3827.882 kb on + strand at 3828.057 kb on - strand, within BWI76_RS18450 at 3828.232 kb on - strand, within BWI76_RS18450 at 3828.240 kb on - strand, within BWI76_RS18450 at 3828.272 kb on - strand, within BWI76_RS18450 at 3828.273 kb on - strand, within BWI76_RS18450 at 3828.617 kb on - strand, within BWI76_RS18450
Per-strain Table
Position Strand Gene LocusTag Fraction KLEB15 MOI 1 remove 3,825,911 + -0.2 3,825,919 - +1.2 3,825,926 + -0.5 3,825,940 + +0.7 3,825,957 - -0.0 3,825,962 - +0.4 3,825,965 - -0.5 3,825,984 + +2.9 3,825,985 + -1.1 3,826,022 + -1.0 3,826,022 + -0.1 3,826,022 + +2.3 3,826,022 + -0.5 3,826,022 + -0.5 3,826,030 - -0.2 3,826,030 - +0.0 3,826,030 - -0.2 3,826,030 - -0.4 3,826,031 - +2.3 3,826,044 + -1.8 3,826,044 - +0.2 3,826,044 - +1.1 3,826,044 - -0.3 3,826,044 - +0.0 3,826,047 + -0.8 3,826,047 - -0.8 3,826,050 + -1.0 3,826,058 - -1.2 3,826,073 - +0.5 3,826,073 - -1.9 3,826,073 - +0.3 3,826,073 - -0.5 3,826,079 - +1.1 3,826,114 - +1.8 3,826,157 - -0.9 3,826,177 + -0.6 3,826,177 + -0.8 3,826,177 + -0.3 3,826,177 + -2.6 3,826,177 + -1.1 3,826,177 + +0.8 3,826,185 - -0.9 3,826,185 - +0.6 3,826,185 - -0.2 3,826,185 - -0.2 3,826,185 - -2.4 3,826,185 - +0.5 3,826,185 - -1.2 3,826,185 - -1.2 3,826,185 - -0.1 3,826,185 - +1.0 3,826,185 - -1.6 3,826,185 - +0.2 3,826,185 - +1.0 3,826,185 - -1.6 3,826,185 - -1.0 3,826,185 - +0.3 3,826,185 - -2.7 3,826,191 + +2.0 3,826,199 - +0.3 3,826,199 - +0.8 3,826,202 + -0.8 3,826,204 + +1.1 3,826,205 - +0.5 3,826,210 - -0.9 3,826,210 - +0.2 3,826,210 - -0.0 3,826,210 - +1.2 3,826,210 - -0.4 3,826,226 - -0.0 3,826,249 - +0.4 3,826,255 + -2.1 3,826,263 - -2.3 3,826,289 + +0.3 3,826,297 - +2.3 3,826,297 - -0.2 3,826,297 - +0.4 3,826,297 - +0.2 3,826,304 - +0.0 3,826,346 - -0.4 3,826,346 - -0.4 3,826,346 - -0.2 3,826,346 - -0.1 3,826,346 - +0.4 3,826,346 - -4.1 3,826,346 - -0.0 3,826,348 + +1.3 3,826,348 + +0.4 3,826,348 + -0.3 3,826,348 + -0.9 3,826,356 - -1.4 3,826,356 - +0.0 3,826,356 - +0.1 3,826,356 - +0.9 3,826,356 - -2.1 3,826,356 - +1.3 3,826,356 - -0.9 3,826,356 - -0.0 3,826,356 - +0.0 3,826,356 - -0.8 3,826,356 - -0.5 3,826,356 - +0.2 3,826,356 - +0.7 3,826,356 - +1.1 3,826,461 + +0.3 3,826,468 - -1.0 3,826,517 - BWI76_RS18440 0.16 +1.1 3,826,519 + BWI76_RS18440 0.17 +0.3 3,826,572 - BWI76_RS18440 0.30 +0.6 3,826,574 + BWI76_RS18440 0.31 -0.0 3,826,576 + BWI76_RS18440 0.31 +0.8 3,826,576 + BWI76_RS18440 0.31 +0.3 3,826,576 + BWI76_RS18440 0.31 -0.2 3,826,582 - BWI76_RS18440 0.33 -1.2 3,826,584 - BWI76_RS18440 0.33 +1.1 3,826,584 - BWI76_RS18440 0.33 -1.4 3,826,584 - BWI76_RS18440 0.33 +4.3 3,826,598 + BWI76_RS18440 0.37 +1.6 3,826,598 + BWI76_RS18440 0.37 +0.1 3,826,598 + BWI76_RS18440 0.37 -0.8 3,826,753 + BWI76_RS18440 0.77 -0.2 3,826,761 - BWI76_RS18440 0.79 +1.8 3,826,762 + BWI76_RS18440 0.79 -0.1 3,826,770 - BWI76_RS18440 0.81 +0.0 3,826,924 + +3.7 3,826,928 - +0.7 3,826,934 + -2.4 3,826,942 - BWI76_RS18445 0.10 +0.1 3,826,944 + BWI76_RS18445 0.10 -3.0 3,827,122 - BWI76_RS18445 0.28 +0.3 3,827,122 - BWI76_RS18445 0.28 +0.5 3,827,122 - BWI76_RS18445 0.28 -1.7 3,827,122 - BWI76_RS18445 0.28 -0.8 3,827,122 - BWI76_RS18445 0.28 -0.6 3,827,122 - BWI76_RS18445 0.28 -0.8 3,827,122 - -1.2 3,827,122 - BWI76_RS18445 0.28 -0.8 3,827,176 + BWI76_RS18445 0.34 -2.2 3,827,178 + BWI76_RS18445 0.34 -0.7 3,827,178 + BWI76_RS18445 0.34 +0.5 3,827,178 + BWI76_RS18445 0.34 -0.5 3,827,188 + BWI76_RS18445 0.35 +1.3 3,827,325 + BWI76_RS18445 0.49 -0.2 3,827,341 + BWI76_RS18445 0.50 -1.7 3,827,365 - BWI76_RS18445 0.53 -0.7 3,827,566 - BWI76_RS18445 0.73 +0.5 3,827,592 + +1.3 3,827,593 - BWI76_RS18445 0.76 -3.4 3,827,677 + BWI76_RS18445 0.84 -1.2 3,827,683 - BWI76_RS18445 0.85 +0.3 3,827,685 - BWI76_RS18445 0.85 -1.2 3,827,857 - +1.7 3,827,882 + -0.2 3,828,057 - BWI76_RS18450 0.16 -0.8 3,828,232 - BWI76_RS18450 0.28 +2.1 3,828,240 - BWI76_RS18450 0.28 -2.0 3,828,272 - BWI76_RS18450 0.30 +1.3 3,828,273 - BWI76_RS18450 0.30 -0.8 3,828,617 - BWI76_RS18450 0.54 -2.7
Or see this region's nucleotide sequence