Experiment: KLEB15 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS16080 and BWI76_RS16085 are separated by 107 nucleotides BWI76_RS16085 and BWI76_RS16090 overlap by 4 nucleotides BWI76_RS16090 and BWI76_RS16095 overlap by 20 nucleotides
BWI76_RS16080: BWI76_RS16080 - LysR family transcriptional regulator, at 3,334,218 to 3,335,114
_RS16080
BWI76_RS16085: BWI76_RS16085 - two-component system sensor histidine kinase DcuS, at 3,335,222 to 3,336,841
_RS16085
BWI76_RS16090: BWI76_RS16090 - two-component system response regulator DcuR, at 3,336,838 to 3,337,557
_RS16090
BWI76_RS16095: BWI76_RS16095 - thiamine biosynthesis protein ApbE, at 3,337,538 to 3,338,488
_RS16095
Position (kb)
3335
3336
3337 Strain fitness (log2 ratio)
-1
0
1
2 at 3334.261 kb on + strand at 3334.356 kb on + strand, within BWI76_RS16080 at 3334.807 kb on - strand, within BWI76_RS16080 at 3334.856 kb on - strand, within BWI76_RS16080 at 3335.359 kb on + strand at 3335.919 kb on + strand, within BWI76_RS16085 at 3335.981 kb on - strand, within BWI76_RS16085 at 3336.249 kb on - strand, within BWI76_RS16085 at 3336.323 kb on - strand, within BWI76_RS16085 at 3336.444 kb on + strand, within BWI76_RS16085 at 3336.452 kb on - strand, within BWI76_RS16085 at 3336.568 kb on + strand, within BWI76_RS16085 at 3336.650 kb on + strand, within BWI76_RS16085 at 3336.822 kb on + strand at 3337.028 kb on - strand, within BWI76_RS16090 at 3337.119 kb on - strand, within BWI76_RS16090 at 3337.143 kb on - strand, within BWI76_RS16090 at 3337.825 kb on + strand, within BWI76_RS16095
Per-strain Table
Position Strand Gene LocusTag Fraction KLEB15 MOI 1 remove 3,334,261 + +0.5 3,334,356 + BWI76_RS16080 0.15 -0.4 3,334,807 - BWI76_RS16080 0.66 +0.3 3,334,856 - BWI76_RS16080 0.71 -1.5 3,335,359 + -0.1 3,335,919 + BWI76_RS16085 0.43 +1.2 3,335,981 - BWI76_RS16085 0.47 +0.3 3,336,249 - BWI76_RS16085 0.63 +1.1 3,336,323 - BWI76_RS16085 0.68 +0.4 3,336,444 + BWI76_RS16085 0.75 -0.2 3,336,452 - BWI76_RS16085 0.76 +1.1 3,336,568 + BWI76_RS16085 0.83 +1.0 3,336,650 + BWI76_RS16085 0.88 +1.1 3,336,822 + -1.2 3,337,028 - BWI76_RS16090 0.26 -0.5 3,337,119 - BWI76_RS16090 0.39 +2.5 3,337,143 - BWI76_RS16090 0.42 -0.3 3,337,825 + BWI76_RS16095 0.30 +1.6
Or see this region's nucleotide sequence