Experiment: KLEB15 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS12730 and BWI76_RS12735 are separated by 623 nucleotides BWI76_RS12735 and BWI76_RS12740 are separated by 427 nucleotides BWI76_RS12740 and BWI76_RS12745 are separated by 76 nucleotides
BWI76_RS12730: BWI76_RS12730 - pyruvate:ferredoxin (flavodoxin) oxidoreductase, at 2,653,158 to 2,656,685
_RS12730
BWI76_RS12735: BWI76_RS12735 - phage repressor protein, at 2,657,309 to 2,657,845
_RS12735
BWI76_RS12740: BWI76_RS12740 - hypothetical protein, at 2,658,273 to 2,658,635
_RS12740
BWI76_RS12745: BWI76_RS12745 - putative prophage membrane protein, at 2,658,712 to 2,659,104
_RS12745
Position (kb)
2657
2658 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 2656.757 kb on + strand at 2656.761 kb on - strand at 2656.952 kb on + strand at 2657.221 kb on + strand at 2657.268 kb on + strand at 2657.276 kb on - strand at 2657.441 kb on + strand, within BWI76_RS12735 at 2657.759 kb on + strand, within BWI76_RS12735 at 2657.826 kb on + strand at 2658.223 kb on - strand at 2658.237 kb on + strand at 2658.264 kb on - strand at 2658.264 kb on - strand at 2658.358 kb on + strand, within BWI76_RS12740 at 2658.361 kb on - strand, within BWI76_RS12740 at 2658.366 kb on - strand, within BWI76_RS12740 at 2658.366 kb on - strand, within BWI76_RS12740 at 2658.377 kb on + strand, within BWI76_RS12740 at 2658.385 kb on - strand, within BWI76_RS12740 at 2658.398 kb on + strand, within BWI76_RS12740 at 2658.398 kb on + strand, within BWI76_RS12740 at 2658.404 kb on + strand, within BWI76_RS12740 at 2658.406 kb on - strand, within BWI76_RS12740 at 2658.406 kb on - strand, within BWI76_RS12740 at 2658.406 kb on - strand at 2658.412 kb on - strand, within BWI76_RS12740 at 2658.412 kb on - strand, within BWI76_RS12740 at 2658.417 kb on + strand, within BWI76_RS12740 at 2658.419 kb on + strand, within BWI76_RS12740 at 2658.419 kb on + strand, within BWI76_RS12740 at 2658.422 kb on - strand, within BWI76_RS12740 at 2658.425 kb on - strand, within BWI76_RS12740 at 2658.427 kb on - strand, within BWI76_RS12740 at 2658.427 kb on - strand, within BWI76_RS12740 at 2658.430 kb on + strand, within BWI76_RS12740 at 2658.430 kb on + strand, within BWI76_RS12740 at 2658.430 kb on + strand, within BWI76_RS12740 at 2658.430 kb on + strand, within BWI76_RS12740 at 2658.436 kb on - strand, within BWI76_RS12740 at 2658.438 kb on - strand, within BWI76_RS12740 at 2658.438 kb on - strand, within BWI76_RS12740 at 2658.438 kb on - strand, within BWI76_RS12740 at 2658.438 kb on - strand, within BWI76_RS12740 at 2658.438 kb on - strand, within BWI76_RS12740 at 2658.478 kb on - strand, within BWI76_RS12740 at 2658.548 kb on + strand, within BWI76_RS12740 at 2658.556 kb on - strand, within BWI76_RS12740 at 2658.619 kb on + strand at 2658.631 kb on + strand at 2658.638 kb on + strand at 2658.646 kb on - strand at 2658.689 kb on - strand at 2658.696 kb on + strand at 2658.704 kb on - strand at 2658.708 kb on + strand at 2658.714 kb on - strand at 2658.714 kb on - strand at 2658.716 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KLEB15 MOI 1 remove 2,656,757 + -0.2 2,656,761 - +0.9 2,656,952 + -0.4 2,657,221 + +0.9 2,657,268 + -0.6 2,657,276 - +0.4 2,657,441 + BWI76_RS12735 0.25 -0.5 2,657,759 + BWI76_RS12735 0.84 -1.0 2,657,826 + +1.2 2,658,223 - -1.5 2,658,237 + -0.7 2,658,264 - -0.2 2,658,264 - +0.1 2,658,358 + BWI76_RS12740 0.23 +0.2 2,658,361 - BWI76_RS12740 0.24 -0.9 2,658,366 - BWI76_RS12740 0.26 -0.6 2,658,366 - BWI76_RS12740 0.26 +0.0 2,658,377 + BWI76_RS12740 0.29 -0.6 2,658,385 - BWI76_RS12740 0.31 +0.4 2,658,398 + BWI76_RS12740 0.34 -1.2 2,658,398 + BWI76_RS12740 0.34 +0.2 2,658,404 + BWI76_RS12740 0.36 -0.4 2,658,406 - BWI76_RS12740 0.37 +1.5 2,658,406 - BWI76_RS12740 0.37 +3.6 2,658,406 - -0.8 2,658,412 - BWI76_RS12740 0.38 -0.2 2,658,412 - BWI76_RS12740 0.38 -0.9 2,658,417 + BWI76_RS12740 0.40 -0.8 2,658,419 + BWI76_RS12740 0.40 -0.3 2,658,419 + BWI76_RS12740 0.40 -1.7 2,658,422 - BWI76_RS12740 0.41 +1.1 2,658,425 - BWI76_RS12740 0.42 -0.4 2,658,427 - BWI76_RS12740 0.42 -1.5 2,658,427 - BWI76_RS12740 0.42 -1.0 2,658,430 + BWI76_RS12740 0.43 -1.0 2,658,430 + BWI76_RS12740 0.43 +0.1 2,658,430 + BWI76_RS12740 0.43 -0.5 2,658,430 + BWI76_RS12740 0.43 -0.5 2,658,436 - BWI76_RS12740 0.45 +0.6 2,658,438 - BWI76_RS12740 0.45 +0.6 2,658,438 - BWI76_RS12740 0.45 -0.5 2,658,438 - BWI76_RS12740 0.45 +0.3 2,658,438 - BWI76_RS12740 0.45 -0.1 2,658,438 - BWI76_RS12740 0.45 +0.1 2,658,478 - BWI76_RS12740 0.56 -1.2 2,658,548 + BWI76_RS12740 0.76 +0.4 2,658,556 - BWI76_RS12740 0.78 +2.6 2,658,619 + +0.9 2,658,631 + +4.1 2,658,638 + -2.8 2,658,646 - -2.1 2,658,689 - +1.5 2,658,696 + +2.5 2,658,704 - -0.3 2,658,708 + -3.9 2,658,714 - +1.5 2,658,714 - -1.8 2,658,716 - +1.7
Or see this region's nucleotide sequence