Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS18480

Experiment: KLEB15 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS18470 and BWI76_RS18475 are separated by 71 nucleotidesBWI76_RS18475 and BWI76_RS18480 are separated by 140 nucleotidesBWI76_RS18480 and BWI76_RS18485 are separated by 157 nucleotides BWI76_RS18470: BWI76_RS18470 - hypothetical protein, at 3,831,090 to 3,831,522 _RS18470 BWI76_RS18475: BWI76_RS18475 - hypothetical protein, at 3,831,594 to 3,831,983 _RS18475 BWI76_RS18480: BWI76_RS18480 - LysR family transcriptional regulator, at 3,832,124 to 3,833,044 _RS18480 BWI76_RS18485: BWI76_RS18485 - LysR family transcriptional regulator, at 3,833,202 to 3,834,104 _RS18485 Position (kb) 3832 3833 3834Strain fitness (log2 ratio) -2 -1 0 1 2at 3831.162 kb on - strand, within BWI76_RS18470at 3831.284 kb on - strand, within BWI76_RS18470at 3831.330 kb on + strand, within BWI76_RS18470at 3831.369 kb on - strand, within BWI76_RS18470at 3831.592 kb on + strandat 3831.705 kb on + strand, within BWI76_RS18475at 3831.747 kb on + strand, within BWI76_RS18475at 3831.754 kb on + strand, within BWI76_RS18475at 3831.789 kb on + strand, within BWI76_RS18475at 3831.807 kb on - strand, within BWI76_RS18475at 3831.820 kb on + strand, within BWI76_RS18475at 3831.828 kb on - strand, within BWI76_RS18475at 3831.868 kb on + strand, within BWI76_RS18475at 3831.935 kb on + strand, within BWI76_RS18475at 3831.945 kb on + strandat 3831.984 kb on + strandat 3832.003 kb on + strandat 3832.083 kb on + strandat 3832.197 kb on + strandat 3832.220 kb on - strand, within BWI76_RS18480at 3832.375 kb on - strand, within BWI76_RS18480at 3832.409 kb on - strand, within BWI76_RS18480at 3832.434 kb on + strand, within BWI76_RS18480at 3832.687 kb on + strand, within BWI76_RS18480at 3832.787 kb on - strand, within BWI76_RS18480at 3833.272 kb on + strandat 3833.441 kb on - strand, within BWI76_RS18485at 3833.643 kb on - strand, within BWI76_RS18485at 3833.758 kb on + strand, within BWI76_RS18485at 3833.962 kb on - strand, within BWI76_RS18485at 3833.980 kb on - strand, within BWI76_RS18485at 3833.995 kb on - strand, within BWI76_RS18485at 3833.995 kb on - strand, within BWI76_RS18485

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Per-strain Table

Position Strand Gene LocusTag Fraction KLEB15 MOI 1
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3,831,162 - BWI76_RS18470 0.17 -0.4
3,831,284 - BWI76_RS18470 0.45 -0.1
3,831,330 + BWI76_RS18470 0.55 -0.2
3,831,369 - BWI76_RS18470 0.64 -2.4
3,831,592 + -0.5
3,831,705 + BWI76_RS18475 0.28 -0.5
3,831,747 + BWI76_RS18475 0.39 -0.9
3,831,754 + BWI76_RS18475 0.41 +0.1
3,831,789 + BWI76_RS18475 0.50 -0.4
3,831,807 - BWI76_RS18475 0.55 +0.6
3,831,820 + BWI76_RS18475 0.58 +0.0
3,831,828 - BWI76_RS18475 0.60 +0.0
3,831,868 + BWI76_RS18475 0.70 -0.3
3,831,935 + BWI76_RS18475 0.87 +0.9
3,831,945 + -1.1
3,831,984 + -0.2
3,832,003 + -1.1
3,832,083 + -1.2
3,832,197 + +0.2
3,832,220 - BWI76_RS18480 0.10 -1.5
3,832,375 - BWI76_RS18480 0.27 -1.3
3,832,409 - BWI76_RS18480 0.31 +0.1
3,832,434 + BWI76_RS18480 0.34 -1.1
3,832,687 + BWI76_RS18480 0.61 -0.7
3,832,787 - BWI76_RS18480 0.72 +0.3
3,833,272 + +0.0
3,833,441 - BWI76_RS18485 0.26 -0.3
3,833,643 - BWI76_RS18485 0.49 +1.4
3,833,758 + BWI76_RS18485 0.62 -1.2
3,833,962 - BWI76_RS18485 0.84 +2.2
3,833,980 - BWI76_RS18485 0.86 -0.3
3,833,995 - BWI76_RS18485 0.88 -0.7
3,833,995 - BWI76_RS18485 0.88 -1.0

Or see this region's nucleotide sequence