Experiment: KLEB15 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS17385 and BWI76_RS17390 are separated by 68 nucleotides BWI76_RS17390 and BWI76_RS17395 are separated by 238 nucleotides BWI76_RS17395 and BWI76_RS17400 are separated by 35 nucleotides
BWI76_RS17385: BWI76_RS17385 - nitrate regulatory protein, at 3,607,936 to 3,609,126
_RS17385
BWI76_RS17390: BWI76_RS17390 - DsrE family protein, at 3,609,195 to 3,609,548
_RS17390
BWI76_RS17395: BWI76_RS17395 - hypothetical protein, at 3,609,787 to 3,610,029
_RS17395
BWI76_RS17400: BWI76_RS17400 - transporter, at 3,610,065 to 3,610,745
_RS17400
Position (kb)
3609
3610 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3608.211 kb on + strand, within BWI76_RS17385 at 3608.219 kb on - strand, within BWI76_RS17385 at 3608.219 kb on - strand, within BWI76_RS17385 at 3608.221 kb on - strand, within BWI76_RS17385 at 3608.288 kb on + strand, within BWI76_RS17385 at 3608.907 kb on + strand, within BWI76_RS17385 at 3608.923 kb on + strand, within BWI76_RS17385 at 3608.993 kb on + strand, within BWI76_RS17385 at 3609.104 kb on - strand at 3609.104 kb on - strand at 3609.274 kb on + strand, within BWI76_RS17390 at 3609.366 kb on + strand, within BWI76_RS17390 at 3609.702 kb on + strand at 3609.702 kb on + strand at 3609.710 kb on - strand at 3610.493 kb on - strand, within BWI76_RS17400
Per-strain Table
Position Strand Gene LocusTag Fraction KLEB15 MOI 1 remove 3,608,211 + BWI76_RS17385 0.23 -1.0 3,608,219 - BWI76_RS17385 0.24 -3.0 3,608,219 - BWI76_RS17385 0.24 +0.5 3,608,221 - BWI76_RS17385 0.24 +0.0 3,608,288 + BWI76_RS17385 0.30 +0.1 3,608,907 + BWI76_RS17385 0.82 +0.2 3,608,923 + BWI76_RS17385 0.83 +0.2 3,608,993 + BWI76_RS17385 0.89 -0.2 3,609,104 - +0.8 3,609,104 - -0.2 3,609,274 + BWI76_RS17390 0.22 +0.1 3,609,366 + BWI76_RS17390 0.48 -1.1 3,609,702 + -0.9 3,609,702 + +0.3 3,609,710 - -0.4 3,610,493 - BWI76_RS17400 0.63 +0.0
Or see this region's nucleotide sequence