Experiment: KLEB15 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS03185 and BWI76_RS03190 overlap by 4 nucleotides BWI76_RS03190 and BWI76_RS03195 overlap by 4 nucleotides BWI76_RS03195 and BWI76_RS03200 are separated by 11 nucleotides BWI76_RS03200 and BWI76_RS03205 are separated by 860 nucleotides
BWI76_RS03185: BWI76_RS03185 - CI repressor, at 656,609 to 657,166
_RS03185
BWI76_RS03190: BWI76_RS03190 - hypothetical protein, at 657,163 to 657,390
_RS03190
BWI76_RS03195: BWI76_RS03195 - P4 phage protein, at 657,387 to 657,707
_RS03195
BWI76_RS03200: BWI76_RS03200 - nucleoside triphosphatase, D5 family protein, at 657,719 to 660,052
_RS03200
BWI76_RS03205: BWI76_RS03205 - hypothetical protein, at 660,913 to 662,153
_RS03205
Position (kb) 657
658
659
660
661 Strain fitness (log2 ratio) -2
-1
0
1
2 at 656.784 kb on - strand, within BWI76_RS03185 at 656.802 kb on + strand, within BWI76_RS03185 at 656.868 kb on - strand, within BWI76_RS03185 at 656.960 kb on - strand, within BWI76_RS03185 at 656.994 kb on - strand, within BWI76_RS03185 at 657.258 kb on + strand, within BWI76_RS03190 at 657.260 kb on + strand, within BWI76_RS03190 at 657.330 kb on + strand, within BWI76_RS03190 at 657.416 kb on - strand at 657.435 kb on + strand, within BWI76_RS03195 at 657.453 kb on - strand, within BWI76_RS03195 at 657.476 kb on - strand, within BWI76_RS03195 at 657.884 kb on - strand at 657.931 kb on + strand at 658.035 kb on - strand, within BWI76_RS03200 at 658.107 kb on + strand, within BWI76_RS03200 at 658.294 kb on + strand, within BWI76_RS03200 at 658.302 kb on - strand, within BWI76_RS03200 at 658.391 kb on - strand, within BWI76_RS03200 at 658.425 kb on + strand, within BWI76_RS03200 at 658.781 kb on + strand, within BWI76_RS03200 at 658.840 kb on + strand, within BWI76_RS03200 at 658.884 kb on - strand, within BWI76_RS03200 at 658.904 kb on - strand, within BWI76_RS03200 at 658.943 kb on + strand, within BWI76_RS03200 at 658.949 kb on - strand, within BWI76_RS03200 at 659.278 kb on + strand, within BWI76_RS03200 at 659.516 kb on - strand, within BWI76_RS03200 at 659.653 kb on - strand, within BWI76_RS03200 at 659.683 kb on + strand, within BWI76_RS03200 at 659.779 kb on + strand, within BWI76_RS03200 at 659.907 kb on + strand at 659.907 kb on + strand at 660.056 kb on + strand at 660.106 kb on - strand at 660.267 kb on + strand at 660.267 kb on + strand at 660.284 kb on + strand at 660.292 kb on - strand at 660.292 kb on - strand at 660.735 kb on + strand at 660.788 kb on - strand at 660.824 kb on + strand at 660.839 kb on - strand at 660.839 kb on - strand at 660.875 kb on - strand at 660.875 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KLEB15 MOI 1 remove 656,784 - BWI76_RS03185 0.31 -1.5 656,802 + BWI76_RS03185 0.35 -0.1 656,868 - BWI76_RS03185 0.46 -0.2 656,960 - BWI76_RS03185 0.63 +1.3 656,994 - BWI76_RS03185 0.69 -0.5 657,258 + BWI76_RS03190 0.42 -0.3 657,260 + BWI76_RS03190 0.43 +0.8 657,330 + BWI76_RS03190 0.73 -0.5 657,416 - -0.5 657,435 + BWI76_RS03195 0.15 +0.4 657,453 - BWI76_RS03195 0.21 -0.8 657,476 - BWI76_RS03195 0.28 +0.4 657,884 - -0.3 657,931 + +0.5 658,035 - BWI76_RS03200 0.14 -0.3 658,107 + BWI76_RS03200 0.17 +0.2 658,294 + BWI76_RS03200 0.25 -0.2 658,302 - BWI76_RS03200 0.25 +0.0 658,391 - BWI76_RS03200 0.29 -0.7 658,425 + BWI76_RS03200 0.30 -0.1 658,781 + BWI76_RS03200 0.46 -1.0 658,840 + BWI76_RS03200 0.48 -0.6 658,884 - BWI76_RS03200 0.50 -0.7 658,904 - BWI76_RS03200 0.51 -0.8 658,943 + BWI76_RS03200 0.52 -0.9 658,949 - BWI76_RS03200 0.53 -1.6 659,278 + BWI76_RS03200 0.67 +0.3 659,516 - BWI76_RS03200 0.77 -0.6 659,653 - BWI76_RS03200 0.83 +0.1 659,683 + BWI76_RS03200 0.84 -0.2 659,779 + BWI76_RS03200 0.88 -1.1 659,907 + +0.9 659,907 + -0.4 660,056 + +0.2 660,106 - +0.1 660,267 + -0.7 660,267 + -0.9 660,284 + +0.3 660,292 - +0.5 660,292 - +1.0 660,735 + -0.2 660,788 - -0.0 660,824 + -0.5 660,839 - -0.3 660,839 - +1.9 660,875 - -2.5 660,875 - -0.0
Or see this region's nucleotide sequence