Experiment: KLEB15 MOI 10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS03780 and BWI76_RS03785 are separated by 46 nucleotides BWI76_RS03785 and BWI76_RS03790 are separated by 82 nucleotides BWI76_RS03790 and BWI76_RS03795 are separated by 178 nucleotides
BWI76_RS03780: BWI76_RS03780 - threonine transporter RhtB, at 782,781 to 783,422
_RS03780
BWI76_RS03785: BWI76_RS03785 - AraC family transcriptional regulator, at 783,469 to 784,284
_RS03785
BWI76_RS03790: BWI76_RS03790 - hypothetical protein, at 784,367 to 784,822
_RS03790
BWI76_RS03795: BWI76_RS03795 - putative aldehyde dehydrogenase, at 785,001 to 786,371
_RS03795
Position (kb) 784
785 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 783.396 kb on + strand at 783.411 kb on + strand at 783.440 kb on + strand at 783.441 kb on - strand at 783.444 kb on + strand at 783.450 kb on + strand at 783.450 kb on + strand at 783.450 kb on + strand at 783.450 kb on + strand at 783.452 kb on - strand at 783.458 kb on - strand at 783.458 kb on - strand at 783.458 kb on - strand at 783.546 kb on - strand at 783.658 kb on - strand, within BWI76_RS03785 at 783.701 kb on + strand, within BWI76_RS03785 at 783.709 kb on - strand, within BWI76_RS03785 at 783.711 kb on + strand, within BWI76_RS03785 at 783.929 kb on - strand, within BWI76_RS03785 at 784.028 kb on + strand, within BWI76_RS03785 at 784.050 kb on + strand, within BWI76_RS03785 at 784.050 kb on + strand, within BWI76_RS03785 at 784.057 kb on + strand, within BWI76_RS03785 at 784.058 kb on - strand, within BWI76_RS03785 at 784.065 kb on - strand, within BWI76_RS03785 at 784.119 kb on - strand, within BWI76_RS03785 at 784.119 kb on - strand, within BWI76_RS03785 at 784.119 kb on - strand, within BWI76_RS03785 at 784.119 kb on - strand, within BWI76_RS03785 at 784.119 kb on - strand, within BWI76_RS03785 at 784.212 kb on - strand at 784.301 kb on - strand at 784.301 kb on - strand at 784.334 kb on - strand at 784.427 kb on - strand, within BWI76_RS03790 at 784.457 kb on + strand, within BWI76_RS03790 at 784.504 kb on + strand, within BWI76_RS03790 at 784.512 kb on - strand, within BWI76_RS03790 at 784.692 kb on + strand, within BWI76_RS03790 at 784.725 kb on + strand, within BWI76_RS03790 at 784.939 kb on + strand at 784.959 kb on + strand at 784.997 kb on + strand at 785.090 kb on - strand at 785.151 kb on + strand, within BWI76_RS03795 at 785.159 kb on - strand, within BWI76_RS03795 at 785.326 kb on + strand, within BWI76_RS03795 at 785.357 kb on - strand, within BWI76_RS03795 at 785.468 kb on + strand, within BWI76_RS03795 at 785.610 kb on + strand, within BWI76_RS03795 at 785.610 kb on + strand, within BWI76_RS03795 at 785.618 kb on - strand, within BWI76_RS03795 at 785.664 kb on - strand, within BWI76_RS03795 at 785.720 kb on - strand, within BWI76_RS03795 at 785.778 kb on + strand, within BWI76_RS03795 at 785.791 kb on - strand, within BWI76_RS03795 at 785.811 kb on - strand, within BWI76_RS03795
Per-strain Table
Position Strand Gene LocusTag Fraction KLEB15 MOI 10 remove 783,396 + +0.2 783,411 + -0.1 783,440 + -0.7 783,441 - -0.5 783,444 + +1.7 783,450 + +1.3 783,450 + +0.7 783,450 + +0.2 783,450 + +0.7 783,452 - -2.8 783,458 - -0.0 783,458 - +0.3 783,458 - -0.2 783,546 - +0.2 783,658 - BWI76_RS03785 0.23 -0.3 783,701 + BWI76_RS03785 0.28 +0.3 783,709 - BWI76_RS03785 0.29 -0.4 783,711 + BWI76_RS03785 0.30 -0.4 783,929 - BWI76_RS03785 0.56 -0.2 784,028 + BWI76_RS03785 0.69 +1.6 784,050 + BWI76_RS03785 0.71 +0.1 784,050 + BWI76_RS03785 0.71 +0.0 784,057 + BWI76_RS03785 0.72 -0.0 784,058 - BWI76_RS03785 0.72 +1.5 784,065 - BWI76_RS03785 0.73 +0.2 784,119 - BWI76_RS03785 0.80 +0.9 784,119 - BWI76_RS03785 0.80 +0.2 784,119 - BWI76_RS03785 0.80 +1.2 784,119 - BWI76_RS03785 0.80 -0.1 784,119 - BWI76_RS03785 0.80 -1.4 784,212 - +0.7 784,301 - -0.8 784,301 - -0.2 784,334 - -0.0 784,427 - BWI76_RS03790 0.13 -2.0 784,457 + BWI76_RS03790 0.20 -1.2 784,504 + BWI76_RS03790 0.30 -0.7 784,512 - BWI76_RS03790 0.32 -0.0 784,692 + BWI76_RS03790 0.71 -0.0 784,725 + BWI76_RS03790 0.79 -1.3 784,939 + -1.1 784,959 + +0.2 784,997 + -0.1 785,090 - +0.6 785,151 + BWI76_RS03795 0.11 +0.1 785,159 - BWI76_RS03795 0.12 -3.3 785,326 + BWI76_RS03795 0.24 +0.7 785,357 - BWI76_RS03795 0.26 +0.6 785,468 + BWI76_RS03795 0.34 -0.7 785,610 + BWI76_RS03795 0.44 +0.1 785,610 + BWI76_RS03795 0.44 +0.6 785,618 - BWI76_RS03795 0.45 +0.4 785,664 - BWI76_RS03795 0.48 +0.4 785,720 - BWI76_RS03795 0.52 -0.9 785,778 + BWI76_RS03795 0.57 -0.7 785,791 - BWI76_RS03795 0.58 -0.0 785,811 - BWI76_RS03795 0.59 +0.1
Or see this region's nucleotide sequence