Experiment: KLEB15 MOI 10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS17660 and BWI76_RS17665 overlap by 16 nucleotides BWI76_RS17665 and BWI76_RS17670 are separated by 18 nucleotides BWI76_RS17670 and BWI76_RS17675 overlap by 4 nucleotides BWI76_RS17675 and BWI76_RS17680 overlap by 7 nucleotides
BWI76_RS17660: BWI76_RS17660 - AraC/XylS familytranscription regulator, at 3,668,737 to 3,669,504
_RS17660
BWI76_RS17665: BWI76_RS17665 - proteasome-type protease, at 3,669,489 to 3,670,241
_RS17665
BWI76_RS17670: BWI76_RS17670 - transglutaminase, at 3,670,260 to 3,671,075
_RS17670
BWI76_RS17675: BWI76_RS17675 - hypothetical protein, at 3,671,072 to 3,672,001
_RS17675
BWI76_RS17680: BWI76_RS17680 - hypothetical protein, at 3,671,995 to 3,673,434
_RS17680
Position (kb)
3670
3671
3672 Strain fitness (log2 ratio)
-1
0
1 at 3669.751 kb on + strand, within BWI76_RS17665 at 3669.899 kb on - strand, within BWI76_RS17665 at 3670.295 kb on + strand at 3670.295 kb on + strand at 3670.366 kb on - strand, within BWI76_RS17670 at 3670.908 kb on + strand, within BWI76_RS17670 at 3670.950 kb on + strand, within BWI76_RS17670 at 3671.105 kb on + strand at 3671.377 kb on - strand, within BWI76_RS17675 at 3671.538 kb on - strand, within BWI76_RS17675 at 3671.694 kb on - strand, within BWI76_RS17675 at 3671.967 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KLEB15 MOI 10 remove 3,669,751 + BWI76_RS17665 0.35 -0.8 3,669,899 - BWI76_RS17665 0.54 +0.7 3,670,295 + -0.3 3,670,295 + -0.0 3,670,366 - BWI76_RS17670 0.13 +1.2 3,670,908 + BWI76_RS17670 0.79 -0.0 3,670,950 + BWI76_RS17670 0.85 +1.3 3,671,105 + +0.2 3,671,377 - BWI76_RS17675 0.33 +0.5 3,671,538 - BWI76_RS17675 0.50 +0.9 3,671,694 - BWI76_RS17675 0.67 +0.6 3,671,967 + +0.5
Or see this region's nucleotide sequence