Experiment: KLEB15 MOI 10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS16440 and BWI76_RS16445 are separated by 10 nucleotides BWI76_RS16445 and BWI76_RS16450 overlap by 1 nucleotides BWI76_RS16450 and BWI76_RS16455 overlap by 8 nucleotides BWI76_RS16455 and BWI76_RS16460 are separated by 59 nucleotides
BWI76_RS16440: BWI76_RS16440 - DUF1656 domain-containing protein, at 3,410,375 to 3,410,611
_RS16440
BWI76_RS16445: BWI76_RS16445 - auxiliary transporter membrane fusion protein, at 3,410,622 to 3,411,518
_RS16445
BWI76_RS16450: BWI76_RS16450 - fusaric acid resistance protein, at 3,411,518 to 3,413,542
_RS16450
BWI76_RS16455: BWI76_RS16455 - superoxide dismutase, at 3,413,535 to 3,414,056
_RS16455
BWI76_RS16460: BWI76_RS16460 - oxidoreductase, at 3,414,116 to 3,415,012
_RS16460
Position (kb) 3411
3412
3413
3414 Strain fitness (log2 ratio) -1
0
1
2 at 3410.839 kb on - strand, within BWI76_RS16445 at 3411.160 kb on + strand, within BWI76_RS16445 at 3411.200 kb on - strand, within BWI76_RS16445 at 3411.515 kb on + strand at 3411.893 kb on + strand, within BWI76_RS16450 at 3411.893 kb on + strand, within BWI76_RS16450 at 3411.893 kb on + strand, within BWI76_RS16450 at 3411.901 kb on - strand, within BWI76_RS16450 at 3411.901 kb on - strand, within BWI76_RS16450 at 3412.190 kb on + strand, within BWI76_RS16450 at 3412.348 kb on - strand, within BWI76_RS16450 at 3412.638 kb on - strand, within BWI76_RS16450 at 3412.884 kb on + strand, within BWI76_RS16450 at 3413.343 kb on - strand at 3413.361 kb on + strand at 3413.382 kb on + strand at 3413.390 kb on - strand at 3413.729 kb on + strand, within BWI76_RS16455 at 3413.749 kb on + strand, within BWI76_RS16455 at 3414.262 kb on + strand, within BWI76_RS16460 at 3414.272 kb on - strand, within BWI76_RS16460
Per-strain Table
Position Strand Gene LocusTag Fraction KLEB15 MOI 10 remove 3,410,839 - BWI76_RS16445 0.24 +0.7 3,411,160 + BWI76_RS16445 0.60 +1.6 3,411,200 - BWI76_RS16445 0.64 +2.0 3,411,515 + -0.4 3,411,893 + BWI76_RS16450 0.19 +0.4 3,411,893 + BWI76_RS16450 0.19 -0.1 3,411,893 + BWI76_RS16450 0.19 +0.2 3,411,901 - BWI76_RS16450 0.19 -0.5 3,411,901 - BWI76_RS16450 0.19 +0.1 3,412,190 + BWI76_RS16450 0.33 -1.6 3,412,348 - BWI76_RS16450 0.41 +0.9 3,412,638 - BWI76_RS16450 0.55 +1.3 3,412,884 + BWI76_RS16450 0.67 +0.3 3,413,343 - +0.4 3,413,361 + +1.6 3,413,382 + +0.3 3,413,390 - +0.1 3,413,729 + BWI76_RS16455 0.37 +1.2 3,413,749 + BWI76_RS16455 0.41 +0.6 3,414,262 + BWI76_RS16460 0.16 -0.1 3,414,272 - BWI76_RS16460 0.17 -0.7
Or see this region's nucleotide sequence