Experiment: KLEB15 MOI 10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS13950 and BWI76_RS13955 are separated by 43 nucleotides BWI76_RS13955 and BWI76_RS13960 are separated by 346 nucleotides BWI76_RS13960 and BWI76_RS13965 are separated by 24 nucleotides BWI76_RS13965 and BWI76_RS13970 overlap by 4 nucleotides
BWI76_RS13950: BWI76_RS13950 - hypothetical protein, at 2,912,387 to 2,913,079
_RS13950
BWI76_RS13955: BWI76_RS13955 - hypothetical protein, at 2,913,123 to 2,913,725
_RS13955
BWI76_RS13960: BWI76_RS13960 - urea ABC transporter periplasmic protein, at 2,914,072 to 2,915,130
_RS13960
BWI76_RS13965: BWI76_RS13965 - binding-protein-dependent transport system inner membrane protein, at 2,915,155 to 2,915,970
_RS13965
BWI76_RS13970: BWI76_RS13970 - ABC transporter, at 2,915,967 to 2,916,743
_RS13970
Position (kb)
2914
2915
2916 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2913.300 kb on + strand, within BWI76_RS13955 at 2913.662 kb on - strand, within BWI76_RS13955 at 2913.747 kb on + strand at 2913.947 kb on + strand at 2913.953 kb on + strand at 2913.993 kb on - strand at 2914.099 kb on + strand at 2914.175 kb on - strand at 2914.626 kb on + strand, within BWI76_RS13960 at 2914.686 kb on - strand, within BWI76_RS13960 at 2914.688 kb on - strand, within BWI76_RS13960 at 2914.768 kb on + strand, within BWI76_RS13960 at 2915.563 kb on - strand, within BWI76_RS13965 at 2915.752 kb on - strand, within BWI76_RS13965 at 2916.018 kb on + strand at 2916.026 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KLEB15 MOI 10 remove 2,913,300 + BWI76_RS13955 0.29 -0.6 2,913,662 - BWI76_RS13955 0.89 -0.0 2,913,747 + +1.0 2,913,947 + -0.5 2,913,953 + +1.4 2,913,993 - -1.0 2,914,099 + -0.9 2,914,175 - -0.0 2,914,626 + BWI76_RS13960 0.52 -0.7 2,914,686 - BWI76_RS13960 0.58 -1.8 2,914,688 - BWI76_RS13960 0.58 +0.1 2,914,768 + BWI76_RS13960 0.66 -0.8 2,915,563 - BWI76_RS13965 0.50 -1.0 2,915,752 - BWI76_RS13965 0.73 +0.4 2,916,018 + +2.0 2,916,026 - +0.1
Or see this region's nucleotide sequence