Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS13960

Experiment: KLEB15 MOI 10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS13950 and BWI76_RS13955 are separated by 43 nucleotidesBWI76_RS13955 and BWI76_RS13960 are separated by 346 nucleotidesBWI76_RS13960 and BWI76_RS13965 are separated by 24 nucleotidesBWI76_RS13965 and BWI76_RS13970 overlap by 4 nucleotides BWI76_RS13950: BWI76_RS13950 - hypothetical protein, at 2,912,387 to 2,913,079 _RS13950 BWI76_RS13955: BWI76_RS13955 - hypothetical protein, at 2,913,123 to 2,913,725 _RS13955 BWI76_RS13960: BWI76_RS13960 - urea ABC transporter periplasmic protein, at 2,914,072 to 2,915,130 _RS13960 BWI76_RS13965: BWI76_RS13965 - binding-protein-dependent transport system inner membrane protein, at 2,915,155 to 2,915,970 _RS13965 BWI76_RS13970: BWI76_RS13970 - ABC transporter, at 2,915,967 to 2,916,743 _RS13970 Position (kb) 2914 2915 2916Strain fitness (log2 ratio) -2 -1 0 1 2at 2913.300 kb on + strand, within BWI76_RS13955at 2913.662 kb on - strand, within BWI76_RS13955at 2913.747 kb on + strandat 2913.947 kb on + strandat 2913.953 kb on + strandat 2913.993 kb on - strandat 2914.099 kb on + strandat 2914.175 kb on - strandat 2914.626 kb on + strand, within BWI76_RS13960at 2914.686 kb on - strand, within BWI76_RS13960at 2914.688 kb on - strand, within BWI76_RS13960at 2914.768 kb on + strand, within BWI76_RS13960at 2915.563 kb on - strand, within BWI76_RS13965at 2915.752 kb on - strand, within BWI76_RS13965at 2916.018 kb on + strandat 2916.026 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KLEB15 MOI 10
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2,913,300 + BWI76_RS13955 0.29 -0.6
2,913,662 - BWI76_RS13955 0.89 -0.0
2,913,747 + +1.0
2,913,947 + -0.5
2,913,953 + +1.4
2,913,993 - -1.0
2,914,099 + -0.9
2,914,175 - -0.0
2,914,626 + BWI76_RS13960 0.52 -0.7
2,914,686 - BWI76_RS13960 0.58 -1.8
2,914,688 - BWI76_RS13960 0.58 +0.1
2,914,768 + BWI76_RS13960 0.66 -0.8
2,915,563 - BWI76_RS13965 0.50 -1.0
2,915,752 - BWI76_RS13965 0.73 +0.4
2,916,018 + +2.0
2,916,026 - +0.1

Or see this region's nucleotide sequence