Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS18775

Experiment: KLEB14 MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS18765 and BWI76_RS18770 are separated by 102 nucleotidesBWI76_RS18770 and BWI76_RS18775 are separated by 127 nucleotidesBWI76_RS18775 and BWI76_RS18780 are separated by 153 nucleotides BWI76_RS18765: BWI76_RS18765 - FUSC family protein, at 3,888,583 to 3,889,641 _RS18765 BWI76_RS18770: BWI76_RS18770 - DNA gyrase inhibitor, at 3,889,744 to 3,890,217 _RS18770 BWI76_RS18775: BWI76_RS18775 - hypothetical protein, at 3,890,345 to 3,891,781 _RS18775 BWI76_RS18780: BWI76_RS18780 - D-alanyl-D-alanine carboxypeptidase, at 3,891,935 to 3,893,101 _RS18780 Position (kb) 3890 3891 3892Strain fitness (log2 ratio) -2 -1 0 1at 3889.350 kb on - strand, within BWI76_RS18765at 3889.536 kb on + strandat 3889.544 kb on - strandat 3890.075 kb on + strand, within BWI76_RS18770at 3890.198 kb on + strandat 3890.278 kb on + strandat 3890.378 kb on + strandat 3890.544 kb on + strand, within BWI76_RS18775at 3890.644 kb on - strand, within BWI76_RS18775at 3891.253 kb on + strand, within BWI76_RS18775at 3891.441 kb on + strand, within BWI76_RS18775at 3891.449 kb on - strand, within BWI76_RS18775at 3891.553 kb on - strand, within BWI76_RS18775at 3891.782 kb on - strandat 3891.845 kb on - strandat 3891.850 kb on - strandat 3892.470 kb on - strand, within BWI76_RS18780at 3892.495 kb on - strand, within BWI76_RS18780at 3892.736 kb on + strand, within BWI76_RS18780

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Per-strain Table

Position Strand Gene LocusTag Fraction KLEB14 MOI 0.1
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3,889,350 - BWI76_RS18765 0.72 +0.4
3,889,536 + +1.1
3,889,544 - +1.1
3,890,075 + BWI76_RS18770 0.70 +0.9
3,890,198 + -0.7
3,890,278 + +1.0
3,890,378 + +0.2
3,890,544 + BWI76_RS18775 0.14 +0.5
3,890,644 - BWI76_RS18775 0.21 -1.3
3,891,253 + BWI76_RS18775 0.63 +0.5
3,891,441 + BWI76_RS18775 0.76 -2.3
3,891,449 - BWI76_RS18775 0.77 -0.8
3,891,553 - BWI76_RS18775 0.84 -0.4
3,891,782 - +1.5
3,891,845 - +1.5
3,891,850 - -0.0
3,892,470 - BWI76_RS18780 0.46 -1.5
3,892,495 - BWI76_RS18780 0.48 -1.2
3,892,736 + BWI76_RS18780 0.69 -1.5

Or see this region's nucleotide sequence