Experiment: KLEB14 MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS15330 and BWI76_RS15335 overlap by 1 nucleotides BWI76_RS15335 and BWI76_RS15340 are separated by 84 nucleotides
BWI76_RS15330: BWI76_RS15330 - urea ABC transporter permease subunit UrtC, at 3,209,844 to 3,210,917
_RS15330
BWI76_RS15335: BWI76_RS15335 - branched-chain amino acid ABC transporter permease, at 3,210,917 to 3,212,491
_RS15335
BWI76_RS15340: BWI76_RS15340 - urea ABC transporter substrate-binding protein, at 3,212,576 to 3,213,847
_RS15340
Position (kb)
3210
3211
3212
3213 Strain fitness (log2 ratio)
-1
0
1
2 at 3209.976 kb on + strand, within BWI76_RS15330 at 3209.976 kb on + strand, within BWI76_RS15330 at 3209.979 kb on - strand, within BWI76_RS15330 at 3210.145 kb on + strand, within BWI76_RS15330 at 3210.155 kb on + strand, within BWI76_RS15330 at 3210.155 kb on + strand at 3210.415 kb on + strand, within BWI76_RS15330 at 3210.925 kb on - strand at 3211.111 kb on + strand at 3211.144 kb on + strand, within BWI76_RS15335 at 3211.850 kb on + strand, within BWI76_RS15335 at 3211.885 kb on - strand, within BWI76_RS15335 at 3212.101 kb on + strand, within BWI76_RS15335 at 3212.534 kb on + strand at 3212.758 kb on + strand, within BWI76_RS15340 at 3213.004 kb on - strand, within BWI76_RS15340 at 3213.110 kb on - strand, within BWI76_RS15340 at 3213.476 kb on - strand, within BWI76_RS15340 at 3213.488 kb on - strand, within BWI76_RS15340
Per-strain Table
Position Strand Gene LocusTag Fraction KLEB14 MOI 0.1 remove 3,209,976 + BWI76_RS15330 0.12 +0.0 3,209,976 + BWI76_RS15330 0.12 -0.4 3,209,979 - BWI76_RS15330 0.13 -1.0 3,210,145 + BWI76_RS15330 0.28 -0.2 3,210,155 + BWI76_RS15330 0.29 -0.8 3,210,155 + +2.5 3,210,415 + BWI76_RS15330 0.53 -0.8 3,210,925 - -0.4 3,211,111 + -1.5 3,211,144 + BWI76_RS15335 0.14 -0.3 3,211,850 + BWI76_RS15335 0.59 -0.8 3,211,885 - BWI76_RS15335 0.61 -0.3 3,212,101 + BWI76_RS15335 0.75 -1.3 3,212,534 + -0.5 3,212,758 + BWI76_RS15340 0.14 -1.4 3,213,004 - BWI76_RS15340 0.34 -1.3 3,213,110 - BWI76_RS15340 0.42 +0.1 3,213,476 - BWI76_RS15340 0.71 -0.2 3,213,488 - BWI76_RS15340 0.72 +0.7
Or see this region's nucleotide sequence