Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS14675

Experiment: KLEB14 MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS14665 and BWI76_RS14670 are separated by 10 nucleotidesBWI76_RS14670 and BWI76_RS14675 overlap by 86 nucleotidesBWI76_RS14675 and BWI76_RS14680 are separated by 12 nucleotidesBWI76_RS14680 and BWI76_RS14685 overlap by 1 nucleotides BWI76_RS14665: BWI76_RS14665 - minor fimbrial subunit YfcQ, at 3,080,566 to 3,081,081 _RS14665 BWI76_RS14670: BWI76_RS14670 - hypothetical protein, at 3,081,092 to 3,081,697 _RS14670 BWI76_RS14675: BWI76_RS14675 - fimbrial chaperone YfcS, at 3,081,612 to 3,082,364 _RS14675 BWI76_RS14680: BWI76_RS14680 - SefF, at 3,082,377 to 3,082,901 _RS14680 BWI76_RS14685: BWI76_RS14685 - fimbrial protein, at 3,082,901 to 3,083,494 _RS14685 Position (kb) 3081 3082 3083Strain fitness (log2 ratio) -2 -1 0 1 2at 3080.649 kb on - strand, within BWI76_RS14665at 3080.805 kb on + strand, within BWI76_RS14665at 3080.899 kb on - strand, within BWI76_RS14665at 3081.057 kb on - strandat 3081.158 kb on - strand, within BWI76_RS14670at 3081.205 kb on + strand, within BWI76_RS14670at 3081.736 kb on - strand, within BWI76_RS14675at 3081.752 kb on - strand, within BWI76_RS14675at 3081.752 kb on - strand, within BWI76_RS14675at 3081.865 kb on + strand, within BWI76_RS14675at 3081.935 kb on + strandat 3082.639 kb on - strand, within BWI76_RS14680at 3082.708 kb on - strand, within BWI76_RS14680at 3082.828 kb on - strand, within BWI76_RS14680at 3082.871 kb on + strandat 3082.924 kb on + strandat 3083.280 kb on + strand, within BWI76_RS14685

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Per-strain Table

Position Strand Gene LocusTag Fraction KLEB14 MOI 0.1
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3,080,649 - BWI76_RS14665 0.16 -2.3
3,080,805 + BWI76_RS14665 0.46 +0.6
3,080,899 - BWI76_RS14665 0.65 +0.2
3,081,057 - -0.1
3,081,158 - BWI76_RS14670 0.11 +2.1
3,081,205 + BWI76_RS14670 0.19 -0.6
3,081,736 - BWI76_RS14675 0.16 -1.2
3,081,752 - BWI76_RS14675 0.19 -0.6
3,081,752 - BWI76_RS14675 0.19 -1.1
3,081,865 + BWI76_RS14675 0.34 -1.1
3,081,935 + +0.5
3,082,639 - BWI76_RS14680 0.50 -0.0
3,082,708 - BWI76_RS14680 0.63 -0.3
3,082,828 - BWI76_RS14680 0.86 +0.5
3,082,871 + -0.3
3,082,924 + +1.1
3,083,280 + BWI76_RS14685 0.64 -0.4

Or see this region's nucleotide sequence