Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS14155

Experiment: KLEB14 MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS14150 and BWI76_RS14155 are separated by 3 nucleotidesBWI76_RS14155 and BWI76_RS14160 are separated by 11 nucleotides BWI76_RS14150: BWI76_RS14150 - dihydrolipoyllysine-residue acetyltransferase, at 2,959,986 to 2,961,515 _RS14150 BWI76_RS14155: BWI76_RS14155 - transketolase, at 2,961,519 to 2,962,538 _RS14155 BWI76_RS14160: BWI76_RS14160 - ABC transporter substrate-binding protein, at 2,962,550 to 2,963,512 _RS14160 Position (kb) 2961 2962 2963Strain fitness (log2 ratio) -1 0 1at 2961.052 kb on - strand, within BWI76_RS14150at 2961.084 kb on + strand, within BWI76_RS14150at 2961.119 kb on + strand, within BWI76_RS14150at 2961.200 kb on + strand, within BWI76_RS14150at 2961.600 kb on - strandat 2961.600 kb on - strandat 2961.602 kb on + strandat 2962.064 kb on + strand, within BWI76_RS14155at 2962.351 kb on - strand, within BWI76_RS14155at 2962.356 kb on - strand, within BWI76_RS14155at 2962.457 kb on - strandat 2962.690 kb on - strand, within BWI76_RS14160at 2962.964 kb on + strand, within BWI76_RS14160at 2963.020 kb on - strand, within BWI76_RS14160at 2963.198 kb on - strand, within BWI76_RS14160at 2963.241 kb on + strand, within BWI76_RS14160at 2963.375 kb on + strand, within BWI76_RS14160at 2963.388 kb on + strand, within BWI76_RS14160at 2963.481 kb on + strandat 2963.481 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KLEB14 MOI 0.1
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2,961,052 - BWI76_RS14150 0.70 -0.6
2,961,084 + BWI76_RS14150 0.72 -0.6
2,961,119 + BWI76_RS14150 0.74 -1.7
2,961,200 + BWI76_RS14150 0.79 +0.8
2,961,600 - +0.0
2,961,600 - +0.5
2,961,602 + -1.1
2,962,064 + BWI76_RS14155 0.53 -0.7
2,962,351 - BWI76_RS14155 0.82 -0.9
2,962,356 - BWI76_RS14155 0.82 -1.1
2,962,457 - +1.0
2,962,690 - BWI76_RS14160 0.15 +0.9
2,962,964 + BWI76_RS14160 0.43 -0.0
2,963,020 - BWI76_RS14160 0.49 +0.7
2,963,198 - BWI76_RS14160 0.67 -0.5
2,963,241 + BWI76_RS14160 0.72 -0.3
2,963,375 + BWI76_RS14160 0.86 -0.7
2,963,388 + BWI76_RS14160 0.87 +0.5
2,963,481 + -0.2
2,963,481 + -1.0

Or see this region's nucleotide sequence