Experiment: KLEB14 MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS13005 and BWI76_RS13010 overlap by 4 nucleotides BWI76_RS13010 and BWI76_RS13015 are separated by 415 nucleotides
BWI76_RS13005: BWI76_RS13005 - thiamine pyrophosphate protein TPP-binding protein, at 2,712,797 to 2,714,491
_RS13005
BWI76_RS13010: BWI76_RS13010 - LysR family transcriptional regulator, at 2,714,488 to 2,715,408
_RS13010
BWI76_RS13015: BWI76_RS13015 - LysR family transcriptional regulator, at 2,715,824 to 2,716,735
_RS13015
Position (kb)
2714
2715
2716 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2713.560 kb on - strand, within BWI76_RS13005 at 2713.616 kb on + strand, within BWI76_RS13005 at 2713.624 kb on - strand, within BWI76_RS13005 at 2713.646 kb on - strand, within BWI76_RS13005 at 2713.694 kb on + strand, within BWI76_RS13005 at 2713.694 kb on + strand, within BWI76_RS13005 at 2713.703 kb on - strand at 2713.712 kb on - strand, within BWI76_RS13005 at 2713.712 kb on - strand, within BWI76_RS13005 at 2713.713 kb on - strand, within BWI76_RS13005 at 2713.713 kb on - strand at 2713.758 kb on - strand, within BWI76_RS13005 at 2713.760 kb on + strand, within BWI76_RS13005 at 2713.766 kb on - strand, within BWI76_RS13005 at 2713.915 kb on + strand, within BWI76_RS13005 at 2714.090 kb on + strand, within BWI76_RS13005 at 2714.150 kb on + strand, within BWI76_RS13005 at 2714.182 kb on + strand at 2714.187 kb on + strand, within BWI76_RS13005 at 2714.187 kb on + strand, within BWI76_RS13005 at 2714.189 kb on + strand, within BWI76_RS13005 at 2714.190 kb on - strand, within BWI76_RS13005 at 2714.501 kb on + strand at 2714.501 kb on + strand at 2714.815 kb on + strand, within BWI76_RS13010 at 2714.843 kb on - strand, within BWI76_RS13010 at 2715.004 kb on + strand, within BWI76_RS13010 at 2715.092 kb on - strand, within BWI76_RS13010 at 2715.184 kb on + strand, within BWI76_RS13010 at 2715.237 kb on - strand, within BWI76_RS13010 at 2715.401 kb on + strand at 2715.759 kb on - strand at 2715.800 kb on - strand at 2715.900 kb on + strand at 2715.905 kb on + strand at 2715.908 kb on - strand at 2715.910 kb on + strand at 2715.918 kb on - strand, within BWI76_RS13015 at 2715.974 kb on - strand, within BWI76_RS13015 at 2715.979 kb on - strand, within BWI76_RS13015 at 2716.020 kb on - strand, within BWI76_RS13015 at 2716.046 kb on - strand, within BWI76_RS13015 at 2716.054 kb on + strand, within BWI76_RS13015 at 2716.238 kb on - strand, within BWI76_RS13015
Per-strain Table
Position Strand Gene LocusTag Fraction KLEB14 MOI 0.1 remove 2,713,560 - BWI76_RS13005 0.45 +0.2 2,713,616 + BWI76_RS13005 0.48 -2.5 2,713,624 - BWI76_RS13005 0.49 -0.3 2,713,646 - BWI76_RS13005 0.50 +0.9 2,713,694 + BWI76_RS13005 0.53 +0.5 2,713,694 + BWI76_RS13005 0.53 +0.5 2,713,703 - +2.1 2,713,712 - BWI76_RS13005 0.54 -0.3 2,713,712 - BWI76_RS13005 0.54 -0.1 2,713,713 - BWI76_RS13005 0.54 -0.4 2,713,713 - +0.8 2,713,758 - BWI76_RS13005 0.57 +0.2 2,713,760 + BWI76_RS13005 0.57 -1.3 2,713,766 - BWI76_RS13005 0.57 +0.1 2,713,915 + BWI76_RS13005 0.66 +0.3 2,714,090 + BWI76_RS13005 0.76 +1.7 2,714,150 + BWI76_RS13005 0.80 +0.5 2,714,182 + -2.0 2,714,187 + BWI76_RS13005 0.82 +2.3 2,714,187 + BWI76_RS13005 0.82 +0.5 2,714,189 + BWI76_RS13005 0.82 +1.2 2,714,190 - BWI76_RS13005 0.82 -0.2 2,714,501 + -0.2 2,714,501 + +0.2 2,714,815 + BWI76_RS13010 0.36 -0.2 2,714,843 - BWI76_RS13010 0.39 +1.5 2,715,004 + BWI76_RS13010 0.56 +0.7 2,715,092 - BWI76_RS13010 0.66 -0.2 2,715,184 + BWI76_RS13010 0.76 +0.0 2,715,237 - BWI76_RS13010 0.81 +2.5 2,715,401 + +0.4 2,715,759 - +0.5 2,715,800 - -0.3 2,715,900 + +0.3 2,715,905 + -1.1 2,715,908 - -1.0 2,715,910 + -0.2 2,715,918 - BWI76_RS13015 0.10 -0.2 2,715,974 - BWI76_RS13015 0.16 +0.1 2,715,979 - BWI76_RS13015 0.17 +0.5 2,716,020 - BWI76_RS13015 0.21 -1.8 2,716,046 - BWI76_RS13015 0.24 -1.0 2,716,054 + BWI76_RS13015 0.25 -1.3 2,716,238 - BWI76_RS13015 0.45 -2.8
Or see this region's nucleotide sequence