Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS04045

Experiment: KLEB14 MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS04035 and BWI76_RS04040 are separated by 13 nucleotidesBWI76_RS04040 and BWI76_RS04045 are separated by 341 nucleotidesBWI76_RS04045 and BWI76_RS04050 are separated by 47 nucleotidesBWI76_RS04050 and BWI76_RS04055 are separated by 108 nucleotides BWI76_RS04035: BWI76_RS04035 - LuxR family transcriptional regulator, at 834,420 to 835,100 _RS04035 BWI76_RS04040: BWI76_RS04040 - cys-tRNA(pro)/cys-tRNA(cys) deacylase, at 835,114 to 835,572 _RS04040 BWI76_RS04045: BWI76_RS04045 - PTS system lactose/cellobiose-specific transporter subunit IIC, at 835,914 to 837,257 _RS04045 BWI76_RS04050: BWI76_RS04050 - hydroxamate siderophore iron reductase FhuF, at 837,305 to 838,093 _RS04050 BWI76_RS04055: BWI76_RS04055 - GGDEF domain-containing protein, at 838,202 to 839,248 _RS04055 Position (kb) 835 836 837 838Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 834.916 kb on - strand, within BWI76_RS04035at 834.920 kb on + strand, within BWI76_RS04035at 834.980 kb on + strand, within BWI76_RS04035at 834.980 kb on + strand, within BWI76_RS04035at 834.988 kb on - strand, within BWI76_RS04035at 834.988 kb on - strand, within BWI76_RS04035at 834.995 kb on - strand, within BWI76_RS04035at 834.995 kb on - strand, within BWI76_RS04035at 834.997 kb on + strand, within BWI76_RS04035at 834.997 kb on + strand, within BWI76_RS04035at 834.997 kb on + strandat 835.004 kb on + strand, within BWI76_RS04035at 835.004 kb on + strand, within BWI76_RS04035at 835.005 kb on - strand, within BWI76_RS04035at 835.005 kb on - strand, within BWI76_RS04035at 835.005 kb on - strand, within BWI76_RS04035at 835.009 kb on + strand, within BWI76_RS04035at 835.009 kb on + strand, within BWI76_RS04035at 835.014 kb on + strand, within BWI76_RS04035at 835.014 kb on + strand, within BWI76_RS04035at 835.020 kb on + strand, within BWI76_RS04035at 835.020 kb on + strand, within BWI76_RS04035at 835.020 kb on + strand, within BWI76_RS04035at 835.020 kb on + strand, within BWI76_RS04035at 835.020 kb on + strand, within BWI76_RS04035at 835.020 kb on + strand, within BWI76_RS04035at 835.020 kb on + strand, within BWI76_RS04035at 835.020 kb on + strand, within BWI76_RS04035at 835.020 kb on + strand, within BWI76_RS04035at 835.020 kb on + strand, within BWI76_RS04035at 835.020 kb on + strand, within BWI76_RS04035at 835.028 kb on - strand, within BWI76_RS04035at 835.028 kb on - strand, within BWI76_RS04035at 835.028 kb on - strand, within BWI76_RS04035at 835.028 kb on - strand, within BWI76_RS04035at 835.028 kb on - strand, within BWI76_RS04035at 835.028 kb on - strand, within BWI76_RS04035at 835.028 kb on - strand, within BWI76_RS04035at 835.063 kb on + strandat 835.070 kb on - strandat 835.072 kb on + strandat 835.078 kb on + strandat 835.080 kb on + strandat 835.080 kb on + strandat 835.080 kb on + strandat 835.087 kb on + strandat 835.087 kb on + strandat 835.087 kb on + strandat 835.088 kb on - strandat 835.090 kb on + strandat 835.095 kb on + strandat 835.095 kb on - strandat 835.095 kb on - strandat 835.095 kb on - strandat 835.098 kb on - strandat 835.100 kb on + strandat 835.100 kb on - strandat 835.100 kb on - strandat 835.100 kb on - strandat 835.100 kb on - strandat 835.101 kb on + strandat 835.103 kb on + strandat 835.129 kb on + strandat 835.133 kb on - strandat 835.139 kb on + strandat 835.142 kb on + strandat 835.150 kb on - strandat 835.166 kb on + strand, within BWI76_RS04040at 835.174 kb on - strand, within BWI76_RS04040at 835.174 kb on - strand, within BWI76_RS04040at 835.207 kb on - strand, within BWI76_RS04040at 835.207 kb on - strand, within BWI76_RS04040at 835.212 kb on + strand, within BWI76_RS04040at 835.219 kb on - strand, within BWI76_RS04040at 835.220 kb on - strand, within BWI76_RS04040at 835.224 kb on + strand, within BWI76_RS04040at 835.232 kb on - strand, within BWI76_RS04040at 835.246 kb on - strand, within BWI76_RS04040at 835.274 kb on - strand, within BWI76_RS04040at 835.282 kb on - strand, within BWI76_RS04040at 835.286 kb on + strand, within BWI76_RS04040at 835.453 kb on + strand, within BWI76_RS04040at 835.482 kb on + strand, within BWI76_RS04040at 835.482 kb on + strand, within BWI76_RS04040at 835.490 kb on - strand, within BWI76_RS04040at 835.493 kb on + strand, within BWI76_RS04040at 835.493 kb on + strand, within BWI76_RS04040at 835.493 kb on + strand, within BWI76_RS04040at 835.501 kb on - strand, within BWI76_RS04040at 835.506 kb on - strand, within BWI76_RS04040at 835.529 kb on + strandat 835.569 kb on - strandat 835.569 kb on - strandat 835.584 kb on + strandat 835.592 kb on - strandat 835.784 kb on + strandat 835.897 kb on - strandat 835.897 kb on - strandat 835.899 kb on + strandat 835.907 kb on - strandat 835.996 kb on - strandat 836.154 kb on - strand, within BWI76_RS04045at 836.348 kb on - strand, within BWI76_RS04045at 836.524 kb on + strand, within BWI76_RS04045at 836.531 kb on - strand, within BWI76_RS04045at 836.660 kb on - strand, within BWI76_RS04045at 836.675 kb on - strand, within BWI76_RS04045at 836.842 kb on + strand, within BWI76_RS04045at 837.008 kb on + strand, within BWI76_RS04045at 837.011 kb on - strand, within BWI76_RS04045at 837.016 kb on - strand, within BWI76_RS04045at 837.078 kb on - strand, within BWI76_RS04045at 837.143 kb on - strandat 837.337 kb on - strandat 837.366 kb on - strandat 837.434 kb on - strand, within BWI76_RS04050at 837.572 kb on + strand, within BWI76_RS04050at 837.777 kb on - strandat 837.839 kb on + strand, within BWI76_RS04050at 837.906 kb on + strand, within BWI76_RS04050at 837.946 kb on - strand, within BWI76_RS04050at 837.956 kb on - strand, within BWI76_RS04050at 837.970 kb on - strand, within BWI76_RS04050at 838.030 kb on + strandat 838.032 kb on + strandat 838.032 kb on + strandat 838.032 kb on + strandat 838.040 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KLEB14 MOI 0.1
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834,916 - BWI76_RS04035 0.73 -1.7
834,920 + BWI76_RS04035 0.73 -1.4
834,980 + BWI76_RS04035 0.82 +0.2
834,980 + BWI76_RS04035 0.82 +1.7
834,988 - BWI76_RS04035 0.83 -1.2
834,988 - BWI76_RS04035 0.83 +0.1
834,995 - BWI76_RS04035 0.84 +0.1
834,995 - BWI76_RS04035 0.84 +0.8
834,997 + BWI76_RS04035 0.85 -0.5
834,997 + BWI76_RS04035 0.85 -0.5
834,997 + -0.7
835,004 + BWI76_RS04035 0.86 +1.3
835,004 + BWI76_RS04035 0.86 -1.2
835,005 - BWI76_RS04035 0.86 +0.1
835,005 - BWI76_RS04035 0.86 +1.5
835,005 - BWI76_RS04035 0.86 -1.0
835,009 + BWI76_RS04035 0.86 +0.0
835,009 + BWI76_RS04035 0.86 +0.2
835,014 + BWI76_RS04035 0.87 +1.2
835,014 + BWI76_RS04035 0.87 -0.6
835,020 + BWI76_RS04035 0.88 -0.5
835,020 + BWI76_RS04035 0.88 +0.2
835,020 + BWI76_RS04035 0.88 -0.1
835,020 + BWI76_RS04035 0.88 -0.0
835,020 + BWI76_RS04035 0.88 -0.2
835,020 + BWI76_RS04035 0.88 +0.6
835,020 + BWI76_RS04035 0.88 +1.0
835,020 + BWI76_RS04035 0.88 +1.5
835,020 + BWI76_RS04035 0.88 -0.8
835,020 + BWI76_RS04035 0.88 -0.0
835,020 + BWI76_RS04035 0.88 -1.1
835,028 - BWI76_RS04035 0.89 +0.6
835,028 - BWI76_RS04035 0.89 -0.5
835,028 - BWI76_RS04035 0.89 -0.7
835,028 - BWI76_RS04035 0.89 -1.1
835,028 - BWI76_RS04035 0.89 -0.2
835,028 - BWI76_RS04035 0.89 +1.5
835,028 - BWI76_RS04035 0.89 -0.9
835,063 + +0.4
835,070 - +0.4
835,072 + -1.4
835,078 + +2.2
835,080 + +0.4
835,080 + -0.3
835,080 + +0.7
835,087 + -0.2
835,087 + -0.9
835,087 + +0.3
835,088 - -0.0
835,090 + -0.3
835,095 + -0.0
835,095 - -0.1
835,095 - +0.5
835,095 - +0.6
835,098 - +0.4
835,100 + +0.7
835,100 - -2.4
835,100 - +0.5
835,100 - +0.1
835,100 - +2.7
835,101 + -0.3
835,103 + +0.2
835,129 + -0.9
835,133 - +0.1
835,139 + +0.1
835,142 + +0.4
835,150 - +0.3
835,166 + BWI76_RS04040 0.11 -0.8
835,174 - BWI76_RS04040 0.13 +0.9
835,174 - BWI76_RS04040 0.13 +0.4
835,207 - BWI76_RS04040 0.20 -1.5
835,207 - BWI76_RS04040 0.20 -0.4
835,212 + BWI76_RS04040 0.21 +0.6
835,219 - BWI76_RS04040 0.23 +0.3
835,220 - BWI76_RS04040 0.23 +3.8
835,224 + BWI76_RS04040 0.24 +0.1
835,232 - BWI76_RS04040 0.26 +0.9
835,246 - BWI76_RS04040 0.29 +1.7
835,274 - BWI76_RS04040 0.35 -0.4
835,282 - BWI76_RS04040 0.37 +3.5
835,286 + BWI76_RS04040 0.37 -1.9
835,453 + BWI76_RS04040 0.74 +3.0
835,482 + BWI76_RS04040 0.80 +0.0
835,482 + BWI76_RS04040 0.80 +0.2
835,490 - BWI76_RS04040 0.82 +0.2
835,493 + BWI76_RS04040 0.83 -0.7
835,493 + BWI76_RS04040 0.83 +0.4
835,493 + BWI76_RS04040 0.83 -0.3
835,501 - BWI76_RS04040 0.84 +0.1
835,506 - BWI76_RS04040 0.85 +0.6
835,529 + +0.1
835,569 - -0.3
835,569 - -0.2
835,584 + -0.3
835,592 - +0.7
835,784 + +2.3
835,897 - +1.1
835,897 - +0.4
835,899 + -1.3
835,907 - -0.1
835,996 - -0.1
836,154 - BWI76_RS04045 0.18 -1.2
836,348 - BWI76_RS04045 0.32 -0.3
836,524 + BWI76_RS04045 0.45 -0.9
836,531 - BWI76_RS04045 0.46 -0.5
836,660 - BWI76_RS04045 0.56 +1.5
836,675 - BWI76_RS04045 0.57 +0.1
836,842 + BWI76_RS04045 0.69 -0.2
837,008 + BWI76_RS04045 0.81 -0.1
837,011 - BWI76_RS04045 0.82 +0.3
837,016 - BWI76_RS04045 0.82 -0.8
837,078 - BWI76_RS04045 0.87 -2.4
837,143 - -1.7
837,337 - +0.5
837,366 - +0.1
837,434 - BWI76_RS04050 0.16 -2.6
837,572 + BWI76_RS04050 0.34 +1.6
837,777 - +2.5
837,839 + BWI76_RS04050 0.68 +0.1
837,906 + BWI76_RS04050 0.76 +4.3
837,946 - BWI76_RS04050 0.81 +0.1
837,956 - BWI76_RS04050 0.83 +0.8
837,970 - BWI76_RS04050 0.84 -0.5
838,030 + +0.5
838,032 + +0.0
838,032 + +0.2
838,032 + +1.0
838,040 - -0.3

Or see this region's nucleotide sequence