Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS22865

Experiment: KLEB13 MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS22860 and BWI76_RS22865 are separated by 69 nucleotidesBWI76_RS22865 and BWI76_RS22870 are separated by 111 nucleotides BWI76_RS22860: BWI76_RS22860 - SecY-interacting protein, at 4,769,302 to 4,769,847 _RS22860 BWI76_RS22865: BWI76_RS22865 - NADPH-dependent 7-cyano-7-deazaguanine reductase, at 4,769,917 to 4,770,762 _RS22865 BWI76_RS22870: BWI76_RS22870 - LOG family protein, at 4,770,874 to 4,772,241 _RS22870 Position (kb) 4769 4770 4771Strain fitness (log2 ratio) -2 -1 0 1at 4768.985 kb on - strandat 4769.116 kb on + strandat 4769.378 kb on - strand, within BWI76_RS22860at 4769.683 kb on - strand, within BWI76_RS22860at 4769.798 kb on + strandat 4769.826 kb on + strandat 4769.834 kb on - strandat 4769.880 kb on - strandat 4769.948 kb on - strandat 4770.001 kb on - strandat 4770.003 kb on + strand, within BWI76_RS22865at 4770.011 kb on - strand, within BWI76_RS22865at 4770.061 kb on - strand, within BWI76_RS22865at 4770.091 kb on + strand, within BWI76_RS22865at 4770.099 kb on + strand, within BWI76_RS22865at 4770.399 kb on + strand, within BWI76_RS22865at 4770.415 kb on - strand, within BWI76_RS22865at 4770.442 kb on + strand, within BWI76_RS22865at 4770.830 kb on + strandat 4770.892 kb on - strandat 4771.221 kb on - strand, within BWI76_RS22870at 4771.287 kb on + strand, within BWI76_RS22870at 4771.295 kb on + strand, within BWI76_RS22870at 4771.635 kb on - strand, within BWI76_RS22870

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Per-strain Table

Position Strand Gene LocusTag Fraction KLEB13 MOI 0.1
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4,768,985 - -0.4
4,769,116 + -1.1
4,769,378 - BWI76_RS22860 0.14 -0.2
4,769,683 - BWI76_RS22860 0.70 +0.3
4,769,798 + +0.3
4,769,826 + -0.2
4,769,834 - +0.0
4,769,880 - +1.2
4,769,948 - +0.0
4,770,001 - -0.5
4,770,003 + BWI76_RS22865 0.10 -0.3
4,770,011 - BWI76_RS22865 0.11 -0.4
4,770,061 - BWI76_RS22865 0.17 +0.4
4,770,091 + BWI76_RS22865 0.21 -2.1
4,770,099 + BWI76_RS22865 0.22 +0.1
4,770,399 + BWI76_RS22865 0.57 -0.8
4,770,415 - BWI76_RS22865 0.59 -2.0
4,770,442 + BWI76_RS22865 0.62 -1.5
4,770,830 + +0.4
4,770,892 - -0.1
4,771,221 - BWI76_RS22870 0.25 -0.8
4,771,287 + BWI76_RS22870 0.30 -0.3
4,771,295 + BWI76_RS22870 0.31 -0.1
4,771,635 - BWI76_RS22870 0.56 -0.0

Or see this region's nucleotide sequence