Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS15925

Experiment: KLEB13 MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS15915 and BWI76_RS15920 are separated by 102 nucleotidesBWI76_RS15920 and BWI76_RS15925 are separated by 148 nucleotidesBWI76_RS15925 and BWI76_RS15930 are separated by 10 nucleotidesBWI76_RS15930 and BWI76_RS15935 are separated by 1 nucleotides BWI76_RS15915: BWI76_RS15915 - YnfC family lipoprotein, at 3,301,046 to 3,301,756 _RS15915 BWI76_RS15920: BWI76_RS15920 - hypothetical protein, at 3,301,859 to 3,302,110 _RS15920 BWI76_RS15925: BWI76_RS15925 - dimethyl sulfoxide reductase subunit A, at 3,302,259 to 3,304,694 _RS15925 BWI76_RS15930: BWI76_RS15930 - dimethylsulfoxide reductase, chain B, at 3,304,705 to 3,305,322 _RS15930 BWI76_RS15935: BWI76_RS15935 - dimethyl sulfoxide reductase, at 3,305,324 to 3,306,181 _RS15935 Position (kb) 3302 3303 3304 3305Strain fitness (log2 ratio) -3 -2 -1 0 1at 3301.677 kb on + strand, within BWI76_RS15915at 3301.689 kb on + strandat 3301.702 kb on + strandat 3301.779 kb on - strandat 3301.871 kb on + strandat 3301.887 kb on - strand, within BWI76_RS15920at 3302.134 kb on - strandat 3302.473 kb on - strandat 3302.857 kb on - strand, within BWI76_RS15925at 3302.887 kb on - strand, within BWI76_RS15925at 3303.716 kb on + strand, within BWI76_RS15925at 3303.748 kb on - strand, within BWI76_RS15925at 3304.008 kb on - strand, within BWI76_RS15925at 3304.663 kb on + strandat 3304.928 kb on + strand, within BWI76_RS15930at 3304.928 kb on + strand, within BWI76_RS15930at 3304.936 kb on - strand, within BWI76_RS15930at 3304.936 kb on - strand, within BWI76_RS15930at 3305.042 kb on + strand, within BWI76_RS15930

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Per-strain Table

Position Strand Gene LocusTag Fraction KLEB13 MOI 0.1
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3,301,677 + BWI76_RS15915 0.89 +0.3
3,301,689 + -0.9
3,301,702 + -1.4
3,301,779 - +1.4
3,301,871 + -1.3
3,301,887 - BWI76_RS15920 0.11 -1.1
3,302,134 - -0.3
3,302,473 - -0.0
3,302,857 - BWI76_RS15925 0.25 -0.9
3,302,887 - BWI76_RS15925 0.26 -0.7
3,303,716 + BWI76_RS15925 0.60 -1.1
3,303,748 - BWI76_RS15925 0.61 -0.9
3,304,008 - BWI76_RS15925 0.72 -1.0
3,304,663 + -2.8
3,304,928 + BWI76_RS15930 0.36 -1.6
3,304,928 + BWI76_RS15930 0.36 +1.0
3,304,936 - BWI76_RS15930 0.37 -0.9
3,304,936 - BWI76_RS15930 0.37 -0.9
3,305,042 + BWI76_RS15930 0.55 +0.4

Or see this region's nucleotide sequence