Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS14715

Experiment: KLEB13 MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS14710 and BWI76_RS14715 are separated by 49 nucleotidesBWI76_RS14715 and BWI76_RS14720 overlap by 20 nucleotidesBWI76_RS14720 and BWI76_RS14725 are separated by 87 nucleotidesBWI76_RS14725 and BWI76_RS14730 are separated by 61 nucleotides BWI76_RS14710: BWI76_RS14710 - FAD-dependent oxidoreductase, at 3,088,960 to 3,090,282 _RS14710 BWI76_RS14715: BWI76_RS14715 - type I methionyl aminopeptidase, at 3,090,332 to 3,091,111 _RS14715 BWI76_RS14720: BWI76_RS14720 - hypothetical protein, at 3,091,092 to 3,091,310 _RS14720 BWI76_RS14725: BWI76_RS14725 - HxlR family transcriptional regulator, at 3,091,398 to 3,091,865 _RS14725 BWI76_RS14730: BWI76_RS14730 - 4-oxalocrotonate tautomerase, at 3,091,927 to 3,092,163 _RS14730 Position (kb) 3090 3091 3092Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3089.405 kb on + strand, within BWI76_RS14710at 3089.424 kb on + strand, within BWI76_RS14710at 3089.836 kb on - strand, within BWI76_RS14710at 3090.044 kb on - strand, within BWI76_RS14710at 3090.516 kb on - strand, within BWI76_RS14715at 3090.652 kb on - strand, within BWI76_RS14715at 3090.693 kb on + strand, within BWI76_RS14715at 3091.003 kb on - strand, within BWI76_RS14715at 3091.020 kb on - strand, within BWI76_RS14715at 3091.412 kb on + strandat 3091.412 kb on + strandat 3091.420 kb on - strandat 3091.420 kb on - strandat 3091.420 kb on - strandat 3091.420 kb on - strandat 3091.496 kb on - strand, within BWI76_RS14725at 3091.642 kb on - strand, within BWI76_RS14725at 3091.752 kb on + strand, within BWI76_RS14725at 3091.752 kb on + strand, within BWI76_RS14725at 3091.760 kb on - strand, within BWI76_RS14725at 3091.942 kb on + strandat 3092.064 kb on - strand, within BWI76_RS14730at 3092.066 kb on + strand, within BWI76_RS14730at 3092.068 kb on - strand, within BWI76_RS14730at 3092.081 kb on + strand, within BWI76_RS14730

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Per-strain Table

Position Strand Gene LocusTag Fraction KLEB13 MOI 0.1
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3,089,405 + BWI76_RS14710 0.34 +0.4
3,089,424 + BWI76_RS14710 0.35 -0.1
3,089,836 - BWI76_RS14710 0.66 +0.2
3,090,044 - BWI76_RS14710 0.82 -0.9
3,090,516 - BWI76_RS14715 0.24 -1.7
3,090,652 - BWI76_RS14715 0.41 +0.8
3,090,693 + BWI76_RS14715 0.46 -0.9
3,091,003 - BWI76_RS14715 0.86 -2.0
3,091,020 - BWI76_RS14715 0.88 -0.7
3,091,412 + -0.1
3,091,412 + +0.9
3,091,420 - -0.1
3,091,420 - +0.7
3,091,420 - -0.8
3,091,420 - +3.0
3,091,496 - BWI76_RS14725 0.21 +0.5
3,091,642 - BWI76_RS14725 0.52 +0.3
3,091,752 + BWI76_RS14725 0.76 -1.5
3,091,752 + BWI76_RS14725 0.76 -2.1
3,091,760 - BWI76_RS14725 0.77 +0.6
3,091,942 + -1.5
3,092,064 - BWI76_RS14730 0.58 -2.3
3,092,066 + BWI76_RS14730 0.59 -0.2
3,092,068 - BWI76_RS14730 0.59 +0.0
3,092,081 + BWI76_RS14730 0.65 -0.0

Or see this region's nucleotide sequence