Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS09935

Experiment: KLEB13 MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS09930 and BWI76_RS09935 are separated by 14 nucleotidesBWI76_RS09935 and BWI76_RS09940 overlap by 11 nucleotides BWI76_RS09930: BWI76_RS09930 - ABC transporter ATPase, at 2,089,273 to 2,091,180 _RS09930 BWI76_RS09935: BWI76_RS09935 - paraquat-inducible membrane protein A, at 2,091,195 to 2,092,463 _RS09935 BWI76_RS09940: BWI76_RS09940 - paraquat-inducible protein B, at 2,092,453 to 2,094,090 _RS09940 Position (kb) 2091 2092 2093Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2090.403 kb on + strand, within BWI76_RS09930at 2090.615 kb on - strand, within BWI76_RS09930at 2090.790 kb on + strand, within BWI76_RS09930at 2090.848 kb on - strand, within BWI76_RS09930at 2091.184 kb on + strandat 2091.477 kb on + strand, within BWI76_RS09935at 2091.625 kb on - strand, within BWI76_RS09935at 2091.988 kb on + strand, within BWI76_RS09935at 2092.204 kb on + strand, within BWI76_RS09935at 2092.218 kb on + strand, within BWI76_RS09935at 2092.591 kb on - strandat 2092.805 kb on - strand, within BWI76_RS09940at 2092.807 kb on + strand, within BWI76_RS09940at 2093.058 kb on + strand, within BWI76_RS09940

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Per-strain Table

Position Strand Gene LocusTag Fraction KLEB13 MOI 0.1
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2,090,403 + BWI76_RS09930 0.59 +0.6
2,090,615 - BWI76_RS09930 0.70 -3.3
2,090,790 + BWI76_RS09930 0.80 -0.4
2,090,848 - BWI76_RS09930 0.83 -1.1
2,091,184 + -0.3
2,091,477 + BWI76_RS09935 0.22 -1.8
2,091,625 - BWI76_RS09935 0.34 -0.8
2,091,988 + BWI76_RS09935 0.62 +0.1
2,092,204 + BWI76_RS09935 0.80 -0.9
2,092,218 + BWI76_RS09935 0.81 -1.6
2,092,591 - +0.6
2,092,805 - BWI76_RS09940 0.21 -0.2
2,092,807 + BWI76_RS09940 0.22 -1.0
2,093,058 + BWI76_RS09940 0.37 -3.8

Or see this region's nucleotide sequence