Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS05415

Experiment: KLEB13 MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS05405 and BWI76_RS05410 are separated by 163 nucleotidesBWI76_RS05410 and BWI76_RS05415 are separated by 30 nucleotidesBWI76_RS05415 and BWI76_RS05420 are separated by 104 nucleotides BWI76_RS05405: BWI76_RS05405 - tRNA-Asp, at 1,135,931 to 1,136,007 _RS05405 BWI76_RS05410: BWI76_RS05410 - 2,5-didehydrogluconate reductase B, at 1,136,171 to 1,136,974 _RS05410 BWI76_RS05415: BWI76_RS05415 - LysR family transcriptional regulator, at 1,137,005 to 1,137,907 _RS05415 BWI76_RS05420: BWI76_RS05420 - MFS transporter, at 1,138,012 to 1,139,202 _RS05420 Position (kb) 1137 1138Strain fitness (log2 ratio) -3 -2 -1 0 1at 1136.583 kb on - strand, within BWI76_RS05410at 1136.637 kb on + strand, within BWI76_RS05410at 1136.675 kb on + strand, within BWI76_RS05410at 1136.785 kb on + strand, within BWI76_RS05410at 1137.065 kb on - strandat 1137.349 kb on + strand, within BWI76_RS05415at 1137.383 kb on - strand, within BWI76_RS05415at 1137.448 kb on + strand, within BWI76_RS05415at 1137.448 kb on + strandat 1137.456 kb on - strand, within BWI76_RS05415at 1137.456 kb on - strand, within BWI76_RS05415at 1137.471 kb on - strand, within BWI76_RS05415at 1138.097 kb on + strandat 1138.250 kb on - strand, within BWI76_RS05420at 1138.258 kb on - strand, within BWI76_RS05420at 1138.364 kb on + strand, within BWI76_RS05420at 1138.421 kb on + strand, within BWI76_RS05420at 1138.507 kb on - strand, within BWI76_RS05420at 1138.532 kb on + strand, within BWI76_RS05420at 1138.540 kb on - strand, within BWI76_RS05420at 1138.597 kb on + strand, within BWI76_RS05420at 1138.631 kb on + strand, within BWI76_RS05420at 1138.714 kb on - strand, within BWI76_RS05420

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Per-strain Table

Position Strand Gene LocusTag Fraction KLEB13 MOI 0.1
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1,136,583 - BWI76_RS05410 0.51 +0.1
1,136,637 + BWI76_RS05410 0.58 -0.5
1,136,675 + BWI76_RS05410 0.63 -0.2
1,136,785 + BWI76_RS05410 0.76 -0.4
1,137,065 - +0.2
1,137,349 + BWI76_RS05415 0.38 +0.0
1,137,383 - BWI76_RS05415 0.42 -1.3
1,137,448 + BWI76_RS05415 0.49 -2.4
1,137,448 + -0.8
1,137,456 - BWI76_RS05415 0.50 -0.5
1,137,456 - BWI76_RS05415 0.50 -2.9
1,137,471 - BWI76_RS05415 0.52 -0.9
1,138,097 + -0.9
1,138,250 - BWI76_RS05420 0.20 -0.6
1,138,258 - BWI76_RS05420 0.21 -0.6
1,138,364 + BWI76_RS05420 0.30 +0.8
1,138,421 + BWI76_RS05420 0.34 -0.2
1,138,507 - BWI76_RS05420 0.42 +0.9
1,138,532 + BWI76_RS05420 0.44 +0.1
1,138,540 - BWI76_RS05420 0.44 -0.9
1,138,597 + BWI76_RS05420 0.49 -1.8
1,138,631 + BWI76_RS05420 0.52 -2.3
1,138,714 - BWI76_RS05420 0.59 -0.2

Or see this region's nucleotide sequence