Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS00665

Experiment: KLEB13 MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS00660 and BWI76_RS00665 are separated by 96 nucleotidesBWI76_RS00665 and BWI76_RS00670 are separated by 82 nucleotides BWI76_RS00660: BWI76_RS00660 - ABC transporter, at 134,301 to 135,812 _RS00660 BWI76_RS00665: BWI76_RS00665 - rhamnose ABC transporter substrate-binding protein, at 135,909 to 136,895 _RS00665 BWI76_RS00670: BWI76_RS00670 - Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) (from data), at 136,978 to 137,808 _RS00670 Position (kb) 135 136 137Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 134.975 kb on + strand, within BWI76_RS00660at 135.066 kb on + strand, within BWI76_RS00660at 135.149 kb on - strand, within BWI76_RS00660at 135.151 kb on - strandat 135.207 kb on - strand, within BWI76_RS00660at 135.360 kb on + strand, within BWI76_RS00660at 135.436 kb on + strand, within BWI76_RS00660at 135.563 kb on + strand, within BWI76_RS00660at 135.596 kb on + strand, within BWI76_RS00660at 135.641 kb on + strand, within BWI76_RS00660at 135.649 kb on - strand, within BWI76_RS00660at 135.766 kb on + strandat 135.834 kb on + strandat 135.844 kb on + strandat 135.878 kb on + strandat 135.878 kb on + strandat 135.878 kb on + strandat 135.880 kb on + strandat 135.886 kb on - strandat 135.905 kb on - strandat 136.080 kb on + strand, within BWI76_RS00665at 136.270 kb on + strand, within BWI76_RS00665at 136.272 kb on - strand, within BWI76_RS00665at 136.348 kb on + strand, within BWI76_RS00665at 136.387 kb on - strand, within BWI76_RS00665at 136.409 kb on - strand, within BWI76_RS00665at 136.525 kb on - strand, within BWI76_RS00665at 136.525 kb on - strand, within BWI76_RS00665at 136.571 kb on + strand, within BWI76_RS00665at 136.579 kb on - strand, within BWI76_RS00665at 136.696 kb on + strand, within BWI76_RS00665at 136.715 kb on - strand, within BWI76_RS00665at 136.997 kb on - strandat 136.997 kb on - strandat 137.015 kb on - strandat 137.016 kb on + strandat 137.072 kb on - strand, within BWI76_RS00670at 137.148 kb on + strand, within BWI76_RS00670at 137.324 kb on - strand, within BWI76_RS00670at 137.356 kb on + strand, within BWI76_RS00670at 137.356 kb on + strand, within BWI76_RS00670at 137.364 kb on - strand, within BWI76_RS00670at 137.378 kb on - strand, within BWI76_RS00670at 137.457 kb on + strand, within BWI76_RS00670at 137.457 kb on + strand, within BWI76_RS00670at 137.535 kb on + strand, within BWI76_RS00670at 137.640 kb on - strand, within BWI76_RS00670at 137.770 kb on - strandat 137.778 kb on + strandat 137.808 kb on - strandat 137.846 kb on - strandat 137.846 kb on - strandat 137.846 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KLEB13 MOI 0.1
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134,975 + BWI76_RS00660 0.45 +0.3
135,066 + BWI76_RS00660 0.51 -1.3
135,149 - BWI76_RS00660 0.56 -1.4
135,151 - +1.2
135,207 - BWI76_RS00660 0.60 -3.8
135,360 + BWI76_RS00660 0.70 -0.4
135,436 + BWI76_RS00660 0.75 +2.6
135,563 + BWI76_RS00660 0.83 -0.8
135,596 + BWI76_RS00660 0.86 +1.5
135,641 + BWI76_RS00660 0.89 -1.1
135,649 - BWI76_RS00660 0.89 +1.1
135,766 + -0.0
135,834 + -0.8
135,844 + +0.5
135,878 + +0.0
135,878 + -0.2
135,878 + -3.3
135,880 + -0.5
135,886 - -0.1
135,905 - +0.6
136,080 + BWI76_RS00665 0.17 -0.9
136,270 + BWI76_RS00665 0.37 +0.3
136,272 - BWI76_RS00665 0.37 -2.4
136,348 + BWI76_RS00665 0.44 -0.6
136,387 - BWI76_RS00665 0.48 +2.2
136,409 - BWI76_RS00665 0.51 +1.2
136,525 - BWI76_RS00665 0.62 -1.2
136,525 - BWI76_RS00665 0.62 +0.7
136,571 + BWI76_RS00665 0.67 +1.6
136,579 - BWI76_RS00665 0.68 +0.3
136,696 + BWI76_RS00665 0.80 +0.6
136,715 - BWI76_RS00665 0.82 +2.6
136,997 - -0.7
136,997 - +0.0
137,015 - +0.9
137,016 + +0.1
137,072 - BWI76_RS00670 0.11 -0.5
137,148 + BWI76_RS00670 0.20 -0.1
137,324 - BWI76_RS00670 0.42 -0.1
137,356 + BWI76_RS00670 0.45 -2.7
137,356 + BWI76_RS00670 0.45 +0.3
137,364 - BWI76_RS00670 0.46 +0.8
137,378 - BWI76_RS00670 0.48 +0.8
137,457 + BWI76_RS00670 0.58 -0.4
137,457 + BWI76_RS00670 0.58 -0.0
137,535 + BWI76_RS00670 0.67 -0.9
137,640 - BWI76_RS00670 0.80 +0.2
137,770 - +4.7
137,778 + -0.7
137,808 - +1.0
137,846 - -0.5
137,846 - -1.8
137,846 - +1.2

Or see this region's nucleotide sequence