Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS18880

Experiment: R2A with Nickel (II) chloride 1696 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Nickel (II) chloride 1696 uM
115,775	+				-0.1
115,892	+		LRK55_RS18870	0.37	-0.1
115,892	+		LRK55_RS18870	0.37	-0.2
115,892	+		LRK55_RS18870	0.37	-1.7
115,892	+		LRK55_RS18870	0.37	-0.4
115,893	-		LRK55_RS18870	0.37	-0.1
115,893	-		LRK55_RS18870	0.37	-1.0
115,893	-		LRK55_RS18870	0.37	+0.3
115,893	-		LRK55_RS18870	0.37	-0.9
115,893	-		LRK55_RS18870	0.37	-0.1
115,893	-		LRK55_RS18870	0.37	-0.9
115,893	-		LRK55_RS18870	0.37	-0.3
115,893	-		LRK55_RS18870	0.37	-2.3
115,968	+		LRK55_RS18870	0.55	+0.7
115,968	+		LRK55_RS18870	0.55	+0.1
115,968	+		LRK55_RS18870	0.55	-1.3
115,968	+		LRK55_RS18870	0.55	-1.2
115,968	+		LRK55_RS18870	0.55	-0.2
115,968	+		LRK55_RS18870	0.55	+0.3
115,969	-		LRK55_RS18870	0.55	-0.4
115,969	-		LRK55_RS18870	0.55	+0.3
115,969	-		LRK55_RS18870	0.55	-0.3
116,150	+				+0.0
116,150	+				+0.8
116,151	-				-0.2
116,151	-				+0.7
116,151	-				-2.0
116,151	-				-0.6
116,162	-				-1.2
116,162	-				-0.5
116,162	-				-0.4
116,162	-				+0.2
116,229	+				+0.1
116,229	+				-0.1
116,229	+				-0.1
116,229	+				+0.2
116,229	+				-1.8
116,230	-				-0.7
116,230	-				+0.0
116,230	-				+0.1
116,230	-				-0.3
116,230	-				-1.1
116,230	-				+0.2
116,230	-				-0.1
116,301	+		LRK55_RS18875	0.28	-0.8
116,301	+		LRK55_RS18875	0.28	+0.4
116,301	+		LRK55_RS18875	0.28	-1.2
116,301	+		LRK55_RS18875	0.28	-0.1
116,303	-		LRK55_RS18875	0.28	-0.1
116,373	+		LRK55_RS18875	0.50	-0.1
116,373	+		LRK55_RS18875	0.50	-0.9
116,373	+		LRK55_RS18875	0.50	-2.0
116,374	-		LRK55_RS18875	0.50	-0.3
116,374	-		LRK55_RS18875	0.50	+0.5
116,374	-		LRK55_RS18875	0.50	-0.4
116,374	-		LRK55_RS18875	0.50	-1.0
116,374	-		LRK55_RS18875	0.50	-0.4
116,374	-		LRK55_RS18875	0.50	+0.6
116,374	-		LRK55_RS18875	0.50	-0.3
116,394	+		LRK55_RS18875	0.56	-0.2
116,394	+		LRK55_RS18875	0.56	-0.5
116,394	+		LRK55_RS18875	0.56	+0.8
116,395	-		LRK55_RS18875	0.56	-0.2
116,395	-		LRK55_RS18875	0.56	-0.1
116,395	-		LRK55_RS18875	0.56	-1.3
116,395	-		LRK55_RS18875	0.56	+1.1
116,476	+		LRK55_RS18875	0.81	-0.4
116,477	-		LRK55_RS18875	0.81	-0.2
116,477	-		LRK55_RS18875	0.81	+0.4
116,477	-		LRK55_RS18875	0.81	-0.3
116,477	-		LRK55_RS18875	0.81	+0.9
116,516	-				+0.5
116,516	-				-0.2
116,532	+				-0.1
116,532	+				-0.3
116,532	+				-2.0
116,532	+				-0.3
116,532	+				+0.0
116,533	-				+1.0
116,533	-				-0.3
116,533	-				-0.2
116,533	-				-0.7
116,533	-				+0.1
116,533	-				+0.0
116,533	-				+0.6
116,536	-				-2.2
116,538	+				+0.5
116,539	-				-0.0
116,539	-				-0.1
116,539	-				-0.4
116,539	-				+0.4
116,539	-				+1.6
116,598	+				+0.7
116,624	-				+0.7
116,624	-				+1.3
116,624	-				-1.0
116,624	-				-0.2
116,624	-				-0.0
116,652	-				+0.3
116,652	-				-0.1
116,652	-				-0.4
116,652	-				-0.2
116,652	-				-0.6
116,652	-				+0.3
116,663	+				-0.2
116,663	+				-0.7
116,664	-				-1.2
116,664	-				-3.1
116,692	+		LRK55_RS18880	0.14	-1.1
116,692	+		LRK55_RS18880	0.14	-0.7
116,692	+		LRK55_RS18880	0.14	+1.0
116,693	-		LRK55_RS18880	0.14	-0.1
116,693	-		LRK55_RS18880	0.14	+0.2
116,693	-		LRK55_RS18880	0.14	+0.1
116,728	+		LRK55_RS18880	0.25	-1.0
116,728	+		LRK55_RS18880	0.25	-0.9
116,728	+		LRK55_RS18880	0.25	+0.4
116,728	+		LRK55_RS18880	0.25	+0.3
116,728	+		LRK55_RS18880	0.25	+0.2
116,729	-		LRK55_RS18880	0.26	+1.0
116,757	+		LRK55_RS18880	0.35	+1.4
116,758	-		LRK55_RS18880	0.35	-0.4
116,760	+		LRK55_RS18880	0.36	+0.5
116,760	+		LRK55_RS18880	0.36	-0.3
116,760	+		LRK55_RS18880	0.36	-0.5
116,760	+		LRK55_RS18880	0.36	+0.0
116,809	+		LRK55_RS18880	0.51	-0.4
116,809	+		LRK55_RS18880	0.51	+0.2
116,836	+		LRK55_RS18880	0.60	+1.7
116,836	+		LRK55_RS18880	0.60	-0.4
116,836	+		LRK55_RS18880	0.60	-0.4
116,836	+		LRK55_RS18880	0.60	-0.1
116,836	+		LRK55_RS18880	0.60	+0.5
116,836	+		LRK55_RS18880	0.60	-0.2
116,836	+		LRK55_RS18880	0.60	+0.2
116,837	-		LRK55_RS18880	0.61	-0.7
116,837	-		LRK55_RS18880	0.61	+0.8
116,837	-		LRK55_RS18880	0.61	-0.0
116,858	-		LRK55_RS18880	0.67	+1.1
116,859	-		LRK55_RS18880	0.68	+0.4
116,859	-		LRK55_RS18880	0.68	+0.4
116,859	-		LRK55_RS18880	0.68	+0.4
116,859	-		LRK55_RS18880	0.68	-0.0
116,859	-		LRK55_RS18880	0.68	+0.8
116,859	-		LRK55_RS18880	0.68	-0.2
116,859	-		LRK55_RS18880	0.68	-0.7
116,859	-		LRK55_RS18880	0.68	-1.0
116,859	-		LRK55_RS18880	0.68	+0.5
116,859	-		LRK55_RS18880	0.68	-0.1
116,859	-		LRK55_RS18880	0.68	-0.5
116,859	-		LRK55_RS18880	0.68	+0.9
116,859	-		LRK55_RS18880	0.68	-1.4
116,859	-		LRK55_RS18880	0.68	-0.3
116,859	-		LRK55_RS18880	0.68	+0.0
116,859	-		LRK55_RS18880	0.68	-1.2
116,859	-		LRK55_RS18880	0.68	-1.6
116,859	-		LRK55_RS18880	0.68	-0.0
116,859	-		LRK55_RS18880	0.68	+0.3
116,859	-		LRK55_RS18880	0.68	-0.8
116,859	-		LRK55_RS18880	0.68	-0.3
116,859	-		LRK55_RS18880	0.68	-1.0
116,859	-		LRK55_RS18880	0.68	-0.7
116,859	-		LRK55_RS18880	0.68	-0.1
116,859	-		LRK55_RS18880	0.68	-1.0
116,859	-		LRK55_RS18880	0.68	+1.3
116,859	-		LRK55_RS18880	0.68	+0.2
116,859	-		LRK55_RS18880	0.68	-0.1
116,859	-		LRK55_RS18880	0.68	+0.3
116,859	-		LRK55_RS18880	0.68	-0.6
116,859	-		LRK55_RS18880	0.68	+0.1
116,863	-		LRK55_RS18880	0.69	+0.3
116,863	-		LRK55_RS18880	0.69	+0.5
116,863	-		LRK55_RS18880	0.69	-1.1
116,863	-		LRK55_RS18880	0.69	-0.0
116,863	-		LRK55_RS18880	0.69	-1.5
116,863	-		LRK55_RS18880	0.69	-2.3
116,863	-		LRK55_RS18880	0.69	-0.8
116,863	-		LRK55_RS18880	0.69	-0.3
116,863	-		LRK55_RS18880	0.69	-0.3
116,863	-		LRK55_RS18880	0.69	-1.0
116,863	-		LRK55_RS18880	0.69	-0.9
116,863	-		LRK55_RS18880	0.69	-0.8
116,863	-		LRK55_RS18880	0.69	-0.3
116,863	-		LRK55_RS18880	0.69	-0.6
116,863	-		LRK55_RS18880	0.69	-0.3
116,863	-		LRK55_RS18880	0.69	-0.9
116,863	-		LRK55_RS18880	0.69	-1.5
117,040	+				-0.6
117,040	+				-1.3
117,040	+				+0.1
117,040	+				+0.6
117,040	+				+0.3
117,040	+				+3.0
117,040	+				-0.1
117,041	-				-2.9
117,041	-				+0.4
117,041	-				+0.1
117,041	-				-1.5
117,041	-				+0.5
117,041	-				-0.0
117,041	-				+0.4
117,059	+				-0.9
117,059	+				+0.6
117,059	+				+0.1
117,060	-				-0.7
117,060	-				-0.0
117,060	-				+1.8
117,060	-				+0.2
117,131	+		LRK55_RS18885	0.15	-0.5
117,131	+		LRK55_RS18885	0.15	-0.0
117,131	+		LRK55_RS18885	0.15	+1.3
117,131	+		LRK55_RS18885	0.15	-0.8
117,131	+		LRK55_RS18885	0.15	-2.3
117,131	+		LRK55_RS18885	0.15	-0.7
117,131	+		LRK55_RS18885	0.15	+0.7
117,131	+		LRK55_RS18885	0.15	+1.6
117,132	-		LRK55_RS18885	0.15	-0.0
117,132	-		LRK55_RS18885	0.15	+0.2
117,132	-		LRK55_RS18885	0.15	-0.4
117,132	-		LRK55_RS18885	0.15	-1.2
117,132	-		LRK55_RS18885	0.15	-0.2
117,132	-		LRK55_RS18885	0.15	-0.5
117,132	-		LRK55_RS18885	0.15	-0.1
117,200	+		LRK55_RS18885	0.21	-1.5
117,200	+		LRK55_RS18885	0.21	+1.3
117,200	+		LRK55_RS18885	0.21	+0.6
117,201	-		LRK55_RS18885	0.21	-1.0
117,201	-		LRK55_RS18885	0.21	-0.8
117,201	-		LRK55_RS18885	0.21	+0.5
117,238	+		LRK55_RS18885	0.24	-0.2
117,238	+		LRK55_RS18885	0.24	+0.3
117,238	+		LRK55_RS18885	0.24	-0.8
117,239	-		LRK55_RS18885	0.24	-0.0
117,239	-		LRK55_RS18885	0.24	-0.5
117,239	-		LRK55_RS18885	0.24	-0.1
117,248	+		LRK55_RS18885	0.25	-0.3
117,248	+		LRK55_RS18885	0.25	-0.0
117,248	+		LRK55_RS18885	0.25	-2.5
117,315	+		LRK55_RS18885	0.31	-2.7
117,315	+		LRK55_RS18885	0.31	-0.3
117,315	+		LRK55_RS18885	0.31	-0.7
117,315	+		LRK55_RS18885	0.31	-0.1
117,315	+		LRK55_RS18885	0.31	-0.4
117,315	+		LRK55_RS18885	0.31	-0.4
117,315	+		LRK55_RS18885	0.31	+0.2
117,316	-		LRK55_RS18885	0.31	+1.0
117,316	-		LRK55_RS18885	0.31	-0.1
117,316	-		LRK55_RS18885	0.31	+0.0
117,316	-		LRK55_RS18885	0.31	-0.1
117,316	-		LRK55_RS18885	0.31	-0.7
117,316	-		LRK55_RS18885	0.31	-0.0
117,316	-		LRK55_RS18885	0.31	-0.2
117,331	+		LRK55_RS18885	0.32	-0.5
117,331	+		LRK55_RS18885	0.32	-0.2
117,331	+		LRK55_RS18885	0.32	+0.1
117,331	+		LRK55_RS18885	0.32	-0.2
117,332	-		LRK55_RS18885	0.32	+0.3
117,332	-		LRK55_RS18885	0.32	-1.1
117,332	-		LRK55_RS18885	0.32	-0.5
117,417	+		LRK55_RS18885	0.40	-0.1
117,418	-		LRK55_RS18885	0.40	-0.4
117,496	+		LRK55_RS18885	0.46	-0.4
117,496	+		LRK55_RS18885	0.46	-1.4
117,496	+		LRK55_RS18885	0.46	+0.3
117,496	+		LRK55_RS18885	0.46	-0.5
117,529	+		LRK55_RS18885	0.49	-0.1
117,530	-		LRK55_RS18885	0.49	-2.0
117,530	-		LRK55_RS18885	0.49	+0.0
117,582	+		LRK55_RS18885	0.54	+0.0
117,582	+		LRK55_RS18885	0.54	-0.3
117,582	+		LRK55_RS18885	0.54	-0.8
117,582	+		LRK55_RS18885	0.54	-0.4
117,582	+		LRK55_RS18885	0.54	+0.4
117,582	+		LRK55_RS18885	0.54	-0.3
117,582	+		LRK55_RS18885	0.54	+0.1
117,582	+		LRK55_RS18885	0.54	+0.3
117,582	+		LRK55_RS18885	0.54	+0.1
117,582	+		LRK55_RS18885	0.54	-0.4
117,582	+		LRK55_RS18885	0.54	-0.3
117,583	-		LRK55_RS18885	0.54	-1.4
117,583	-		LRK55_RS18885	0.54	-1.3
117,583	-		LRK55_RS18885	0.54	+0.7
117,583	-		LRK55_RS18885	0.54	-0.6
117,610	+		LRK55_RS18885	0.56	-0.3
117,610	+		LRK55_RS18885	0.56	-0.1
117,693	+		LRK55_RS18885	0.63	+0.4
117,694	-		LRK55_RS18885	0.63	-0.4
117,694	-		LRK55_RS18885	0.63	+1.6
117,700	+		LRK55_RS18885	0.64	-0.1
117,700	+		LRK55_RS18885	0.64	+0.7
117,704	+		LRK55_RS18885	0.64	+0.7
117,704	+		LRK55_RS18885	0.64	+0.3
117,704	+		LRK55_RS18885	0.64	+0.1
117,704	+		LRK55_RS18885	0.64	+1.8
117,704	+		LRK55_RS18885	0.64	+0.1
117,705	-		LRK55_RS18885	0.64	+0.9
117,705	-		LRK55_RS18885	0.64	-0.1
117,705	-		LRK55_RS18885	0.64	-0.9
117,705	-		LRK55_RS18885	0.64	-1.5
117,815	+		LRK55_RS18885	0.74	-0.2
117,815	+		LRK55_RS18885	0.74	-0.0
117,815	+		LRK55_RS18885	0.74	-0.2
117,815	+		LRK55_RS18885	0.74	-0.2
117,815	+		LRK55_RS18885	0.74	+1.7
117,815	+		LRK55_RS18885	0.74	+0.2
117,816	-		LRK55_RS18885	0.74	-1.2
117,816	-		LRK55_RS18885	0.74	-1.6
117,845	-		LRK55_RS18885	0.76	-0.7
117,845	-		LRK55_RS18885	0.76	-0.5
117,891	+		LRK55_RS18885	0.80	-0.7
117,891	+		LRK55_RS18885	0.80	+0.4
117,891	+		LRK55_RS18885	0.80	-1.0
117,892	-		LRK55_RS18885	0.80	+0.2
117,892	-		LRK55_RS18885	0.80	+0.2
117,892	-		LRK55_RS18885	0.80	-0.1
117,892	-		LRK55_RS18885	0.80	+0.8
117,892	-		LRK55_RS18885	0.80	-0.6
117,935	-		LRK55_RS18885	0.84	-0.3
117,947	+		LRK55_RS18885	0.85	+0.2
117,947	+		LRK55_RS18885	0.85	+0.3
117,947	+		LRK55_RS18885	0.85	+0.8
117,947	+		LRK55_RS18885	0.85	-0.5
117,947	+		LRK55_RS18885	0.85	+1.0
117,947	+		LRK55_RS18885	0.85	+0.3
117,947	+		LRK55_RS18885	0.85	+0.2
117,947	+		LRK55_RS18885	0.85	-0.9
117,947	+		LRK55_RS18885	0.85	-0.0
117,947	+		LRK55_RS18885	0.85	+1.1
117,947	+		LRK55_RS18885	0.85	+0.5
117,947	+		LRK55_RS18885	0.85	-0.0
117,947	+		LRK55_RS18885	0.85	+0.1
117,947	+		LRK55_RS18885	0.85	+0.5
117,947	+		LRK55_RS18885	0.85	+0.3
117,947	+		LRK55_RS18885	0.85	+0.1
117,947	+		LRK55_RS18885	0.85	-0.2
117,948	-		LRK55_RS18885	0.85	-0.3
117,948	-		LRK55_RS18885	0.85	-0.1
117,948	-		LRK55_RS18885	0.85	-0.8
117,948	-		LRK55_RS18885	0.85	-0.5
117,948	-		LRK55_RS18885	0.85	-0.3
117,948	-		LRK55_RS18885	0.85	-0.4
117,948	-		LRK55_RS18885	0.85	-0.1
117,948	-		LRK55_RS18885	0.85	+0.2
117,948	-		LRK55_RS18885	0.85	-0.6
117,948	-		LRK55_RS18885	0.85	-1.2
117,948	-		LRK55_RS18885	0.85	-0.3
117,948	-		LRK55_RS18885	0.85	+1.0