Experiment: R2A with Nickel (II) chloride 1696 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK55_RS13975 and LRK55_RS13980 overlap by 4 nucleotides LRK55_RS13980 and LRK55_RS13985 are separated by 1 nucleotides LRK55_RS13985 and LRK55_RS13990 are separated by 70 nucleotides
LRK55_RS13975: LRK55_RS13975 - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, at 3,098,126 to 3,098,953
_RS13975
LRK55_RS13980: LRK55_RS13980 - Spx/MgsR family RNA polymerase-binding regulatory protein, at 3,098,950 to 3,099,306
_RS13980
LRK55_RS13985: LRK55_RS13985 - DUF2165 domain-containing protein, at 3,099,308 to 3,099,805
_RS13985
LRK55_RS13990: LRK55_RS13990 - succinyl-diaminopimelate desuccinylase, at 3,099,876 to 3,101,024
_RS13990
Position (kb) 3098
3099
3100 Strain fitness (log2 ratio) -1
0
1 at 3099.209 kb on - strand, within LRK55_RS13980 at 3099.209 kb on - strand, within LRK55_RS13980 at 3099.257 kb on + strand, within LRK55_RS13980 at 3099.257 kb on + strand, within LRK55_RS13980 at 3099.392 kb on + strand, within LRK55_RS13985 at 3099.830 kb on + strand at 3099.830 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Nickel (II) chloride 1696 uM remove 3,099,209 - LRK55_RS13980 0.73 -0.0 3,099,209 - LRK55_RS13980 0.73 +0.2 3,099,257 + LRK55_RS13980 0.86 +0.4 3,099,257 + LRK55_RS13980 0.86 -1.4 3,099,392 + LRK55_RS13985 0.17 +0.6 3,099,830 + -1.3 3,099,830 + +0.4
Or see this region's nucleotide sequence