Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS05850

Experiment: R2A with Nickel (II) chloride 1696 uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntLRK55_RS05840 and LRK55_RS05845 overlap by 4 nucleotidesLRK55_RS05845 and LRK55_RS05850 are separated by 5 nucleotidesLRK55_RS05850 and LRK55_RS05855 are separated by 10 nucleotides LRK55_RS05840: LRK55_RS05840 - hypothetical protein, at 1,264,209 to 1,264,955 _RS05840 LRK55_RS05845: LRK55_RS05845 - hypothetical protein, at 1,264,952 to 1,265,683 _RS05845 LRK55_RS05850: LRK55_RS05850 - phage tail protein, at 1,265,689 to 1,266,216 _RS05850 LRK55_RS05855: LRK55_RS05855 - phage tail sheath subtilisin-like domain-containing protein, at 1,266,227 to 1,267,828 _RS05855 Position (kb) 1265 1266 1267Strain fitness (log2 ratio) -2 -1 0 1 2at 1264.974 kb on + strandat 1265.028 kb on + strand, within LRK55_RS05845at 1265.028 kb on + strand, within LRK55_RS05845at 1265.029 kb on - strand, within LRK55_RS05845at 1265.029 kb on - strand, within LRK55_RS05845at 1265.577 kb on + strand, within LRK55_RS05845at 1265.578 kb on - strand, within LRK55_RS05845at 1265.578 kb on - strand, within LRK55_RS05845at 1265.701 kb on + strandat 1265.826 kb on - strand, within LRK55_RS05850at 1265.846 kb on + strand, within LRK55_RS05850at 1265.847 kb on - strand, within LRK55_RS05850at 1265.855 kb on + strand, within LRK55_RS05850at 1265.855 kb on + strand, within LRK55_RS05850at 1265.855 kb on + strand, within LRK55_RS05850at 1265.856 kb on - strand, within LRK55_RS05850at 1265.885 kb on + strand, within LRK55_RS05850at 1265.885 kb on + strand, within LRK55_RS05850at 1265.885 kb on + strand, within LRK55_RS05850at 1265.886 kb on - strand, within LRK55_RS05850at 1265.886 kb on - strand, within LRK55_RS05850at 1266.026 kb on + strand, within LRK55_RS05850at 1266.026 kb on + strand, within LRK55_RS05850at 1266.026 kb on + strand, within LRK55_RS05850at 1266.027 kb on - strand, within LRK55_RS05850at 1266.138 kb on - strand, within LRK55_RS05850at 1266.176 kb on + strandat 1266.373 kb on - strandat 1266.373 kb on - strandat 1266.373 kb on - strandat 1266.525 kb on + strand, within LRK55_RS05855at 1266.525 kb on + strand, within LRK55_RS05855at 1266.525 kb on + strand, within LRK55_RS05855at 1266.525 kb on + strand, within LRK55_RS05855at 1266.525 kb on + strand, within LRK55_RS05855at 1266.526 kb on - strand, within LRK55_RS05855at 1266.526 kb on - strand, within LRK55_RS05855at 1266.526 kb on - strand, within LRK55_RS05855at 1266.526 kb on - strand, within LRK55_RS05855at 1266.548 kb on + strand, within LRK55_RS05855at 1266.548 kb on + strand, within LRK55_RS05855at 1266.549 kb on - strand, within LRK55_RS05855at 1266.552 kb on + strand, within LRK55_RS05855at 1266.552 kb on + strand, within LRK55_RS05855at 1266.552 kb on + strand, within LRK55_RS05855at 1266.552 kb on + strand, within LRK55_RS05855at 1266.552 kb on + strand, within LRK55_RS05855at 1266.552 kb on + strand, within LRK55_RS05855at 1266.552 kb on + strand, within LRK55_RS05855at 1266.552 kb on + strand, within LRK55_RS05855at 1266.552 kb on + strand, within LRK55_RS05855at 1266.552 kb on + strand, within LRK55_RS05855at 1266.552 kb on + strand, within LRK55_RS05855at 1266.552 kb on + strand, within LRK55_RS05855at 1266.552 kb on + strand, within LRK55_RS05855at 1266.553 kb on - strand, within LRK55_RS05855at 1266.553 kb on - strand, within LRK55_RS05855at 1266.553 kb on - strand, within LRK55_RS05855at 1266.553 kb on - strand, within LRK55_RS05855at 1266.553 kb on - strand, within LRK55_RS05855at 1266.553 kb on - strand, within LRK55_RS05855at 1266.553 kb on - strand, within LRK55_RS05855at 1266.553 kb on - strand, within LRK55_RS05855at 1266.553 kb on - strand, within LRK55_RS05855at 1266.553 kb on - strand, within LRK55_RS05855at 1266.553 kb on - strand, within LRK55_RS05855at 1266.558 kb on + strand, within LRK55_RS05855at 1266.558 kb on + strand, within LRK55_RS05855at 1266.558 kb on + strand, within LRK55_RS05855at 1266.558 kb on + strand, within LRK55_RS05855at 1266.558 kb on + strand, within LRK55_RS05855at 1266.559 kb on - strand, within LRK55_RS05855at 1266.559 kb on - strand, within LRK55_RS05855at 1266.559 kb on - strand, within LRK55_RS05855at 1266.559 kb on - strand, within LRK55_RS05855at 1266.858 kb on + strand, within LRK55_RS05855at 1266.858 kb on + strand, within LRK55_RS05855at 1266.859 kb on - strand, within LRK55_RS05855at 1266.859 kb on - strand, within LRK55_RS05855at 1266.859 kb on - strand, within LRK55_RS05855at 1266.859 kb on - strand, within LRK55_RS05855at 1266.859 kb on - strand, within LRK55_RS05855at 1266.859 kb on - strand, within LRK55_RS05855at 1266.859 kb on - strand, within LRK55_RS05855at 1266.859 kb on - strand, within LRK55_RS05855at 1266.859 kb on - strand, within LRK55_RS05855at 1267.005 kb on + strand, within LRK55_RS05855at 1267.006 kb on - strand, within LRK55_RS05855at 1267.086 kb on + strand, within LRK55_RS05855at 1267.086 kb on + strand, within LRK55_RS05855at 1267.087 kb on - strand, within LRK55_RS05855at 1267.087 kb on - strand, within LRK55_RS05855at 1267.087 kb on - strand, within LRK55_RS05855at 1267.087 kb on - strand, within LRK55_RS05855at 1267.087 kb on - strand, within LRK55_RS05855at 1267.087 kb on - strand, within LRK55_RS05855at 1267.087 kb on - strand, within LRK55_RS05855at 1267.120 kb on - strand, within LRK55_RS05855at 1267.120 kb on - strand, within LRK55_RS05855at 1267.120 kb on - strand, within LRK55_RS05855

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Nickel (II) chloride 1696 uM
remove
1,264,974 + +0.3
1,265,028 + LRK55_RS05845 0.10 +0.8
1,265,028 + LRK55_RS05845 0.10 +1.3
1,265,029 - LRK55_RS05845 0.11 -0.9
1,265,029 - LRK55_RS05845 0.11 -0.7
1,265,577 + LRK55_RS05845 0.85 +0.5
1,265,578 - LRK55_RS05845 0.86 +0.0
1,265,578 - LRK55_RS05845 0.86 -0.3
1,265,701 + -0.4
1,265,826 - LRK55_RS05850 0.26 +0.1
1,265,846 + LRK55_RS05850 0.30 -0.0
1,265,847 - LRK55_RS05850 0.30 +0.1
1,265,855 + LRK55_RS05850 0.31 -0.7
1,265,855 + LRK55_RS05850 0.31 +0.5
1,265,855 + LRK55_RS05850 0.31 +0.1
1,265,856 - LRK55_RS05850 0.32 +0.4
1,265,885 + LRK55_RS05850 0.37 -0.4
1,265,885 + LRK55_RS05850 0.37 +0.5
1,265,885 + LRK55_RS05850 0.37 -0.1
1,265,886 - LRK55_RS05850 0.37 -1.2
1,265,886 - LRK55_RS05850 0.37 -2.4
1,266,026 + LRK55_RS05850 0.64 +1.1
1,266,026 + LRK55_RS05850 0.64 -0.1
1,266,026 + LRK55_RS05850 0.64 +0.5
1,266,027 - LRK55_RS05850 0.64 -0.0
1,266,138 - LRK55_RS05850 0.85 +0.8
1,266,176 + -0.4
1,266,373 - +0.7
1,266,373 - +0.3
1,266,373 - -1.8
1,266,525 + LRK55_RS05855 0.19 +0.5
1,266,525 + LRK55_RS05855 0.19 +0.8
1,266,525 + LRK55_RS05855 0.19 +0.4
1,266,525 + LRK55_RS05855 0.19 +1.4
1,266,525 + LRK55_RS05855 0.19 -0.2
1,266,526 - LRK55_RS05855 0.19 -1.7
1,266,526 - LRK55_RS05855 0.19 -0.4
1,266,526 - LRK55_RS05855 0.19 +0.8
1,266,526 - LRK55_RS05855 0.19 -0.8
1,266,548 + LRK55_RS05855 0.20 +0.8
1,266,548 + LRK55_RS05855 0.20 +0.6
1,266,549 - LRK55_RS05855 0.20 -0.4
1,266,552 + LRK55_RS05855 0.20 +0.0
1,266,552 + LRK55_RS05855 0.20 +0.2
1,266,552 + LRK55_RS05855 0.20 -0.6
1,266,552 + LRK55_RS05855 0.20 +1.3
1,266,552 + LRK55_RS05855 0.20 -0.4
1,266,552 + LRK55_RS05855 0.20 -1.7
1,266,552 + LRK55_RS05855 0.20 +0.1
1,266,552 + LRK55_RS05855 0.20 +0.2
1,266,552 + LRK55_RS05855 0.20 +0.4
1,266,552 + LRK55_RS05855 0.20 -0.3
1,266,552 + LRK55_RS05855 0.20 +0.6
1,266,552 + LRK55_RS05855 0.20 -1.6
1,266,552 + LRK55_RS05855 0.20 -0.6
1,266,553 - LRK55_RS05855 0.20 +0.6
1,266,553 - LRK55_RS05855 0.20 -2.6
1,266,553 - LRK55_RS05855 0.20 +0.3
1,266,553 - LRK55_RS05855 0.20 +0.6
1,266,553 - LRK55_RS05855 0.20 +0.1
1,266,553 - LRK55_RS05855 0.20 +0.3
1,266,553 - LRK55_RS05855 0.20 +1.3
1,266,553 - LRK55_RS05855 0.20 +0.6
1,266,553 - LRK55_RS05855 0.20 -0.9
1,266,553 - LRK55_RS05855 0.20 +0.0
1,266,553 - LRK55_RS05855 0.20 -2.2
1,266,558 + LRK55_RS05855 0.21 -1.1
1,266,558 + LRK55_RS05855 0.21 -0.4
1,266,558 + LRK55_RS05855 0.21 +0.3
1,266,558 + LRK55_RS05855 0.21 +0.5
1,266,558 + LRK55_RS05855 0.21 -2.1
1,266,559 - LRK55_RS05855 0.21 +1.1
1,266,559 - LRK55_RS05855 0.21 +0.4
1,266,559 - LRK55_RS05855 0.21 -0.4
1,266,559 - LRK55_RS05855 0.21 -1.3
1,266,858 + LRK55_RS05855 0.39 +0.3
1,266,858 + LRK55_RS05855 0.39 +0.4
1,266,859 - LRK55_RS05855 0.39 -1.7
1,266,859 - LRK55_RS05855 0.39 +0.4
1,266,859 - LRK55_RS05855 0.39 -0.2
1,266,859 - LRK55_RS05855 0.39 +1.8
1,266,859 - LRK55_RS05855 0.39 -2.5
1,266,859 - LRK55_RS05855 0.39 +0.6
1,266,859 - LRK55_RS05855 0.39 +0.3
1,266,859 - LRK55_RS05855 0.39 -0.5
1,266,859 - LRK55_RS05855 0.39 +0.3
1,267,005 + LRK55_RS05855 0.49 -0.2
1,267,006 - LRK55_RS05855 0.49 +0.4
1,267,086 + LRK55_RS05855 0.54 -0.4
1,267,086 + LRK55_RS05855 0.54 +1.5
1,267,087 - LRK55_RS05855 0.54 +0.0
1,267,087 - LRK55_RS05855 0.54 -0.6
1,267,087 - LRK55_RS05855 0.54 +1.5
1,267,087 - LRK55_RS05855 0.54 +1.0
1,267,087 - LRK55_RS05855 0.54 +0.4
1,267,087 - LRK55_RS05855 0.54 +1.7
1,267,087 - LRK55_RS05855 0.54 +0.1
1,267,120 - LRK55_RS05855 0.56 +0.4
1,267,120 - LRK55_RS05855 0.56 +1.0
1,267,120 - LRK55_RS05855 0.56 -0.9

Or see this region's nucleotide sequence