Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS05535

Experiment: R2A with Nickel (II) chloride 1696 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK55_RS05530 and LRK55_RS05535 are separated by 75 nucleotidesLRK55_RS05535 and LRK55_RS05540 are separated by 164 nucleotides LRK55_RS05530: LRK55_RS05530 - pyruvate kinase, at 1,201,422 to 1,202,894 _RS05530 LRK55_RS05535: LRK55_RS05535 - S1/P1 nuclease, at 1,202,970 to 1,203,791 _RS05535 LRK55_RS05540: LRK55_RS05540 - type I glyceraldehyde-3-phosphate dehydrogenase, at 1,203,956 to 1,204,957 _RS05540 Position (kb) 1202 1203 1204Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1202.548 kb on + strand, within LRK55_RS05530at 1202.548 kb on + strand, within LRK55_RS05530at 1202.549 kb on - strand, within LRK55_RS05530at 1202.549 kb on - strand, within LRK55_RS05530at 1202.549 kb on - strand, within LRK55_RS05530at 1202.549 kb on - strand, within LRK55_RS05530at 1202.549 kb on - strand, within LRK55_RS05530at 1202.549 kb on - strand, within LRK55_RS05530at 1202.551 kb on + strand, within LRK55_RS05530at 1202.551 kb on + strand, within LRK55_RS05530at 1202.551 kb on + strand, within LRK55_RS05530at 1202.551 kb on + strand, within LRK55_RS05530at 1202.551 kb on + strand, within LRK55_RS05530at 1202.551 kb on + strand, within LRK55_RS05530at 1202.551 kb on + strand, within LRK55_RS05530at 1202.551 kb on + strand, within LRK55_RS05530at 1202.551 kb on + strand, within LRK55_RS05530at 1202.552 kb on - strand, within LRK55_RS05530at 1202.552 kb on - strand, within LRK55_RS05530at 1202.552 kb on - strand, within LRK55_RS05530at 1202.552 kb on - strand, within LRK55_RS05530at 1202.552 kb on - strand, within LRK55_RS05530at 1202.552 kb on - strand, within LRK55_RS05530at 1202.906 kb on - strandat 1202.942 kb on + strandat 1202.943 kb on + strandat 1202.943 kb on + strandat 1202.944 kb on - strandat 1202.944 kb on - strandat 1202.944 kb on - strandat 1202.944 kb on - strandat 1202.944 kb on - strandat 1203.064 kb on + strand, within LRK55_RS05535at 1203.064 kb on + strand, within LRK55_RS05535at 1203.064 kb on + strand, within LRK55_RS05535at 1203.064 kb on + strand, within LRK55_RS05535at 1203.064 kb on + strand, within LRK55_RS05535at 1203.064 kb on + strand, within LRK55_RS05535at 1203.064 kb on + strand, within LRK55_RS05535at 1203.064 kb on + strand, within LRK55_RS05535at 1203.064 kb on + strand, within LRK55_RS05535at 1203.064 kb on + strand, within LRK55_RS05535at 1203.064 kb on + strand, within LRK55_RS05535at 1203.064 kb on + strand, within LRK55_RS05535at 1203.064 kb on + strand, within LRK55_RS05535at 1203.065 kb on + strand, within LRK55_RS05535at 1203.065 kb on - strand, within LRK55_RS05535at 1203.065 kb on - strand, within LRK55_RS05535at 1203.065 kb on - strand, within LRK55_RS05535at 1203.065 kb on - strand, within LRK55_RS05535at 1203.065 kb on - strand, within LRK55_RS05535at 1203.065 kb on - strand, within LRK55_RS05535at 1203.065 kb on - strand, within LRK55_RS05535at 1203.065 kb on - strand, within LRK55_RS05535at 1203.065 kb on - strand, within LRK55_RS05535at 1203.065 kb on - strand, within LRK55_RS05535at 1203.065 kb on - strand, within LRK55_RS05535at 1203.065 kb on - strand, within LRK55_RS05535at 1203.065 kb on - strand, within LRK55_RS05535at 1203.065 kb on - strand, within LRK55_RS05535at 1203.065 kb on - strand, within LRK55_RS05535at 1203.065 kb on - strand, within LRK55_RS05535at 1203.145 kb on + strand, within LRK55_RS05535at 1203.146 kb on - strand, within LRK55_RS05535at 1203.214 kb on + strand, within LRK55_RS05535at 1203.214 kb on + strand, within LRK55_RS05535at 1203.214 kb on + strand, within LRK55_RS05535at 1203.214 kb on + strand, within LRK55_RS05535at 1203.215 kb on - strand, within LRK55_RS05535at 1203.215 kb on - strand, within LRK55_RS05535at 1203.215 kb on - strand, within LRK55_RS05535at 1203.215 kb on - strand, within LRK55_RS05535at 1203.304 kb on + strand, within LRK55_RS05535at 1203.439 kb on + strand, within LRK55_RS05535at 1203.440 kb on - strand, within LRK55_RS05535at 1203.440 kb on - strand, within LRK55_RS05535at 1203.440 kb on - strand, within LRK55_RS05535at 1203.496 kb on + strand, within LRK55_RS05535at 1203.496 kb on + strand, within LRK55_RS05535at 1203.496 kb on + strand, within LRK55_RS05535at 1203.496 kb on + strand, within LRK55_RS05535at 1203.496 kb on + strand, within LRK55_RS05535at 1203.497 kb on - strand, within LRK55_RS05535at 1203.497 kb on - strand, within LRK55_RS05535at 1203.497 kb on - strand, within LRK55_RS05535at 1203.529 kb on + strand, within LRK55_RS05535at 1203.529 kb on + strand, within LRK55_RS05535at 1203.529 kb on + strand, within LRK55_RS05535at 1203.529 kb on + strand, within LRK55_RS05535at 1203.529 kb on + strand, within LRK55_RS05535at 1203.529 kb on + strand, within LRK55_RS05535at 1203.529 kb on + strand, within LRK55_RS05535at 1203.529 kb on + strand, within LRK55_RS05535at 1203.529 kb on + strand, within LRK55_RS05535at 1203.529 kb on + strand, within LRK55_RS05535at 1203.529 kb on + strand, within LRK55_RS05535at 1203.529 kb on + strand, within LRK55_RS05535at 1203.530 kb on - strand, within LRK55_RS05535at 1203.530 kb on - strand, within LRK55_RS05535at 1203.530 kb on - strand, within LRK55_RS05535at 1203.530 kb on - strand, within LRK55_RS05535at 1203.530 kb on - strand, within LRK55_RS05535at 1203.530 kb on - strand, within LRK55_RS05535at 1203.530 kb on - strand, within LRK55_RS05535at 1203.530 kb on - strand, within LRK55_RS05535at 1203.530 kb on - strand, within LRK55_RS05535at 1203.530 kb on - strand, within LRK55_RS05535at 1203.530 kb on - strand, within LRK55_RS05535at 1203.530 kb on - strand, within LRK55_RS05535at 1203.866 kb on + strandat 1203.867 kb on - strandat 1204.079 kb on + strand, within LRK55_RS05540at 1204.079 kb on + strand, within LRK55_RS05540at 1204.079 kb on + strand, within LRK55_RS05540at 1204.079 kb on + strand, within LRK55_RS05540at 1204.080 kb on - strand, within LRK55_RS05540at 1204.080 kb on - strand, within LRK55_RS05540at 1204.080 kb on - strand, within LRK55_RS05540at 1204.080 kb on - strand, within LRK55_RS05540at 1204.088 kb on + strand, within LRK55_RS05540at 1204.088 kb on + strand, within LRK55_RS05540at 1204.088 kb on + strand, within LRK55_RS05540at 1204.088 kb on + strand, within LRK55_RS05540at 1204.088 kb on + strand, within LRK55_RS05540at 1204.088 kb on + strand, within LRK55_RS05540at 1204.088 kb on + strand, within LRK55_RS05540at 1204.088 kb on + strand, within LRK55_RS05540at 1204.088 kb on + strand, within LRK55_RS05540at 1204.088 kb on + strand, within LRK55_RS05540at 1204.088 kb on + strand, within LRK55_RS05540at 1204.089 kb on - strand, within LRK55_RS05540at 1204.089 kb on - strand, within LRK55_RS05540at 1204.089 kb on - strand, within LRK55_RS05540at 1204.089 kb on - strand, within LRK55_RS05540at 1204.089 kb on - strand, within LRK55_RS05540at 1204.089 kb on - strand, within LRK55_RS05540at 1204.089 kb on - strand, within LRK55_RS05540at 1204.089 kb on - strand, within LRK55_RS05540at 1204.089 kb on - strand, within LRK55_RS05540at 1204.089 kb on - strand, within LRK55_RS05540at 1204.089 kb on - strand, within LRK55_RS05540at 1204.376 kb on + strand, within LRK55_RS05540at 1204.376 kb on + strand, within LRK55_RS05540at 1204.376 kb on + strand, within LRK55_RS05540at 1204.377 kb on - strand, within LRK55_RS05540at 1204.377 kb on - strand, within LRK55_RS05540at 1204.377 kb on - strand, within LRK55_RS05540at 1204.377 kb on - strand, within LRK55_RS05540at 1204.718 kb on + strand, within LRK55_RS05540at 1204.718 kb on + strand, within LRK55_RS05540at 1204.718 kb on + strand, within LRK55_RS05540at 1204.718 kb on + strand, within LRK55_RS05540at 1204.718 kb on + strand, within LRK55_RS05540at 1204.718 kb on + strand, within LRK55_RS05540at 1204.719 kb on - strand, within LRK55_RS05540at 1204.719 kb on - strand, within LRK55_RS05540at 1204.719 kb on - strand, within LRK55_RS05540at 1204.719 kb on - strand, within LRK55_RS05540at 1204.719 kb on - strand, within LRK55_RS05540at 1204.719 kb on - strand, within LRK55_RS05540at 1204.782 kb on - strand, within LRK55_RS05540at 1204.782 kb on - strand, within LRK55_RS05540

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Nickel (II) chloride 1696 uM
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1,202,548 + LRK55_RS05530 0.76 -1.8
1,202,548 + LRK55_RS05530 0.76 -0.1
1,202,549 - LRK55_RS05530 0.77 -0.6
1,202,549 - LRK55_RS05530 0.77 -0.2
1,202,549 - LRK55_RS05530 0.77 -0.5
1,202,549 - LRK55_RS05530 0.77 -0.8
1,202,549 - LRK55_RS05530 0.77 +0.1
1,202,549 - LRK55_RS05530 0.77 -0.8
1,202,551 + LRK55_RS05530 0.77 -1.5
1,202,551 + LRK55_RS05530 0.77 +0.5
1,202,551 + LRK55_RS05530 0.77 -0.0
1,202,551 + LRK55_RS05530 0.77 -0.6
1,202,551 + LRK55_RS05530 0.77 -1.9
1,202,551 + LRK55_RS05530 0.77 -0.1
1,202,551 + LRK55_RS05530 0.77 -1.1
1,202,551 + LRK55_RS05530 0.77 -0.6
1,202,551 + LRK55_RS05530 0.77 +0.2
1,202,552 - LRK55_RS05530 0.77 -0.4
1,202,552 - LRK55_RS05530 0.77 +0.9
1,202,552 - LRK55_RS05530 0.77 -1.4
1,202,552 - LRK55_RS05530 0.77 -1.5
1,202,552 - LRK55_RS05530 0.77 -2.0
1,202,552 - LRK55_RS05530 0.77 +1.1
1,202,906 - -1.5
1,202,942 + -0.1
1,202,943 + +0.4
1,202,943 + -0.0
1,202,944 - -0.6
1,202,944 - -1.5
1,202,944 - +0.0
1,202,944 - -0.3
1,202,944 - -0.3
1,203,064 + LRK55_RS05535 0.11 -0.6
1,203,064 + LRK55_RS05535 0.11 -0.1
1,203,064 + LRK55_RS05535 0.11 +0.2
1,203,064 + LRK55_RS05535 0.11 +0.5
1,203,064 + LRK55_RS05535 0.11 +0.7
1,203,064 + LRK55_RS05535 0.11 -0.1
1,203,064 + LRK55_RS05535 0.11 -0.2
1,203,064 + LRK55_RS05535 0.11 -0.6
1,203,064 + LRK55_RS05535 0.11 +1.4
1,203,064 + LRK55_RS05535 0.11 -0.3
1,203,064 + LRK55_RS05535 0.11 -0.1
1,203,064 + LRK55_RS05535 0.11 -0.9
1,203,064 + LRK55_RS05535 0.11 +1.0
1,203,065 + LRK55_RS05535 0.12 +0.4
1,203,065 - LRK55_RS05535 0.12 -0.2
1,203,065 - LRK55_RS05535 0.12 -1.0
1,203,065 - LRK55_RS05535 0.12 +0.4
1,203,065 - LRK55_RS05535 0.12 +1.4
1,203,065 - LRK55_RS05535 0.12 -0.2
1,203,065 - LRK55_RS05535 0.12 +0.5
1,203,065 - LRK55_RS05535 0.12 +0.9
1,203,065 - LRK55_RS05535 0.12 +0.3
1,203,065 - LRK55_RS05535 0.12 +0.1
1,203,065 - LRK55_RS05535 0.12 +0.7
1,203,065 - LRK55_RS05535 0.12 -1.8
1,203,065 - LRK55_RS05535 0.12 -2.3
1,203,065 - LRK55_RS05535 0.12 +0.3
1,203,065 - LRK55_RS05535 0.12 +0.5
1,203,065 - LRK55_RS05535 0.12 -1.1
1,203,065 - LRK55_RS05535 0.12 +0.2
1,203,145 + LRK55_RS05535 0.21 -0.6
1,203,146 - LRK55_RS05535 0.21 -0.3
1,203,214 + LRK55_RS05535 0.30 +0.1
1,203,214 + LRK55_RS05535 0.30 +0.5
1,203,214 + LRK55_RS05535 0.30 -0.5
1,203,214 + LRK55_RS05535 0.30 +0.3
1,203,215 - LRK55_RS05535 0.30 +0.5
1,203,215 - LRK55_RS05535 0.30 +0.0
1,203,215 - LRK55_RS05535 0.30 +0.7
1,203,215 - LRK55_RS05535 0.30 -0.0
1,203,304 + LRK55_RS05535 0.41 +0.7
1,203,439 + LRK55_RS05535 0.57 +0.8
1,203,440 - LRK55_RS05535 0.57 -1.5
1,203,440 - LRK55_RS05535 0.57 +1.0
1,203,440 - LRK55_RS05535 0.57 +0.1
1,203,496 + LRK55_RS05535 0.64 +0.2
1,203,496 + LRK55_RS05535 0.64 +1.0
1,203,496 + LRK55_RS05535 0.64 -0.4
1,203,496 + LRK55_RS05535 0.64 -0.3
1,203,496 + LRK55_RS05535 0.64 -0.3
1,203,497 - LRK55_RS05535 0.64 +0.4
1,203,497 - LRK55_RS05535 0.64 -0.1
1,203,497 - LRK55_RS05535 0.64 +0.3
1,203,529 + LRK55_RS05535 0.68 -0.0
1,203,529 + LRK55_RS05535 0.68 -3.5
1,203,529 + LRK55_RS05535 0.68 +0.1
1,203,529 + LRK55_RS05535 0.68 +1.2
1,203,529 + LRK55_RS05535 0.68 +1.6
1,203,529 + LRK55_RS05535 0.68 +0.0
1,203,529 + LRK55_RS05535 0.68 +0.1
1,203,529 + LRK55_RS05535 0.68 +0.2
1,203,529 + LRK55_RS05535 0.68 +0.7
1,203,529 + LRK55_RS05535 0.68 -1.8
1,203,529 + LRK55_RS05535 0.68 +0.0
1,203,529 + LRK55_RS05535 0.68 -0.6
1,203,530 - LRK55_RS05535 0.68 +0.8
1,203,530 - LRK55_RS05535 0.68 -0.6
1,203,530 - LRK55_RS05535 0.68 -1.0
1,203,530 - LRK55_RS05535 0.68 +0.2
1,203,530 - LRK55_RS05535 0.68 +0.3
1,203,530 - LRK55_RS05535 0.68 -0.2
1,203,530 - LRK55_RS05535 0.68 -1.3
1,203,530 - LRK55_RS05535 0.68 -1.0
1,203,530 - LRK55_RS05535 0.68 +0.8
1,203,530 - LRK55_RS05535 0.68 +0.0
1,203,530 - LRK55_RS05535 0.68 +0.6
1,203,530 - LRK55_RS05535 0.68 +0.4
1,203,866 + +0.5
1,203,867 - -0.4
1,204,079 + LRK55_RS05540 0.12 -0.8
1,204,079 + LRK55_RS05540 0.12 -2.9
1,204,079 + LRK55_RS05540 0.12 -1.5
1,204,079 + LRK55_RS05540 0.12 -3.3
1,204,080 - LRK55_RS05540 0.12 -2.3
1,204,080 - LRK55_RS05540 0.12 -2.7
1,204,080 - LRK55_RS05540 0.12 -1.5
1,204,080 - LRK55_RS05540 0.12 -3.2
1,204,088 + LRK55_RS05540 0.13 -2.0
1,204,088 + LRK55_RS05540 0.13 -2.7
1,204,088 + LRK55_RS05540 0.13 -1.7
1,204,088 + LRK55_RS05540 0.13 -2.6
1,204,088 + LRK55_RS05540 0.13 -2.1
1,204,088 + LRK55_RS05540 0.13 -3.6
1,204,088 + LRK55_RS05540 0.13 -2.0
1,204,088 + LRK55_RS05540 0.13 -0.9
1,204,088 + LRK55_RS05540 0.13 -4.5
1,204,088 + LRK55_RS05540 0.13 -1.3
1,204,088 + LRK55_RS05540 0.13 -1.0
1,204,089 - LRK55_RS05540 0.13 -1.9
1,204,089 - LRK55_RS05540 0.13 -2.6
1,204,089 - LRK55_RS05540 0.13 -1.7
1,204,089 - LRK55_RS05540 0.13 -0.9
1,204,089 - LRK55_RS05540 0.13 -2.0
1,204,089 - LRK55_RS05540 0.13 -2.7
1,204,089 - LRK55_RS05540 0.13 -2.3
1,204,089 - LRK55_RS05540 0.13 -2.5
1,204,089 - LRK55_RS05540 0.13 -2.8
1,204,089 - LRK55_RS05540 0.13 -0.9
1,204,089 - LRK55_RS05540 0.13 -0.9
1,204,376 + LRK55_RS05540 0.42 -1.1
1,204,376 + LRK55_RS05540 0.42 -0.1
1,204,376 + LRK55_RS05540 0.42 -1.0
1,204,377 - LRK55_RS05540 0.42 -2.5
1,204,377 - LRK55_RS05540 0.42 -2.9
1,204,377 - LRK55_RS05540 0.42 -3.1
1,204,377 - LRK55_RS05540 0.42 -2.8
1,204,718 + LRK55_RS05540 0.76 -2.0
1,204,718 + LRK55_RS05540 0.76 -3.0
1,204,718 + LRK55_RS05540 0.76 -2.6
1,204,718 + LRK55_RS05540 0.76 -2.5
1,204,718 + LRK55_RS05540 0.76 -1.5
1,204,718 + LRK55_RS05540 0.76 -2.7
1,204,719 - LRK55_RS05540 0.76 -2.3
1,204,719 - LRK55_RS05540 0.76 -3.1
1,204,719 - LRK55_RS05540 0.76 -3.3
1,204,719 - LRK55_RS05540 0.76 -2.1
1,204,719 - LRK55_RS05540 0.76 -2.8
1,204,719 - LRK55_RS05540 0.76 -3.1
1,204,782 - LRK55_RS05540 0.82 -2.6
1,204,782 - LRK55_RS05540 0.82 -2.0

Or see this region's nucleotide sequence