Experiment: R2A with Nickel (II) chloride 1696 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK55_RS00575 and LRK55_RS00580 are separated by 899 nucleotides LRK55_RS00580 and LRK55_RS00585 are separated by 50 nucleotides LRK55_RS00585 and LRK55_RS00590 overlap by 4 nucleotides
LRK55_RS00575: LRK55_RS00575 - PilZ domain-containing protein, at 129,954 to 130,322
_RS00575
LRK55_RS00580: LRK55_RS00580 - ScpA family protein, at 131,222 to 132,154
_RS00580
LRK55_RS00585: LRK55_RS00585 - SMC-Scp complex subunit ScpB, at 132,205 to 133,026
_RS00585
LRK55_RS00590: LRK55_RS00590 - pseudouridine synthase, at 133,023 to 134,540
_RS00590
Position (kb) 131
132
133 Strain fitness (log2 ratio) -2
-1
0
1 at 130.311 kb on - strand at 130.342 kb on + strand at 130.342 kb on + strand at 130.342 kb on + strand at 130.343 kb on - strand at 130.343 kb on - strand at 130.343 kb on - strand at 130.343 kb on - strand at 130.343 kb on - strand at 130.343 kb on - strand at 130.649 kb on + strand at 130.649 kb on + strand at 130.649 kb on + strand at 130.649 kb on + strand at 130.649 kb on + strand at 130.649 kb on + strand at 130.649 kb on + strand at 130.649 kb on + strand at 130.649 kb on + strand at 130.649 kb on + strand at 130.649 kb on + strand at 130.649 kb on + strand at 130.650 kb on - strand at 130.650 kb on - strand at 130.650 kb on - strand at 130.650 kb on - strand at 130.650 kb on - strand at 130.650 kb on - strand at 130.650 kb on - strand at 130.650 kb on - strand at 130.650 kb on - strand at 130.650 kb on - strand at 130.650 kb on - strand at 130.650 kb on - strand at 130.695 kb on + strand at 130.695 kb on + strand at 130.695 kb on + strand at 130.696 kb on - strand at 130.696 kb on - strand at 130.696 kb on - strand at 130.696 kb on - strand at 130.711 kb on + strand at 130.711 kb on + strand at 130.711 kb on + strand at 130.711 kb on + strand at 130.711 kb on + strand at 130.712 kb on - strand at 130.712 kb on - strand at 130.712 kb on - strand at 130.712 kb on - strand at 130.820 kb on + strand at 130.820 kb on + strand at 130.862 kb on + strand at 130.862 kb on + strand at 130.862 kb on + strand at 130.862 kb on + strand at 130.862 kb on + strand at 130.862 kb on + strand at 131.097 kb on + strand at 131.097 kb on + strand at 131.287 kb on - strand at 132.853 kb on + strand, within LRK55_RS00585 at 132.853 kb on + strand, within LRK55_RS00585 at 132.854 kb on - strand, within LRK55_RS00585
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Nickel (II) chloride 1696 uM remove 130,311 - +0.4 130,342 + +0.6 130,342 + -0.0 130,342 + -0.3 130,343 - +0.9 130,343 - +1.2 130,343 - +0.5 130,343 - +1.0 130,343 - -1.5 130,343 - -1.8 130,649 + -0.1 130,649 + +0.2 130,649 + +1.0 130,649 + -1.7 130,649 + -0.5 130,649 + +0.2 130,649 + +0.1 130,649 + +0.3 130,649 + -1.0 130,649 + +0.7 130,649 + -0.7 130,649 + -0.3 130,650 - -0.7 130,650 - +0.1 130,650 - -0.2 130,650 - +0.1 130,650 - +0.7 130,650 - +0.5 130,650 - +0.5 130,650 - -1.7 130,650 - -0.2 130,650 - +0.7 130,650 - -1.2 130,650 - +1.2 130,695 + +0.7 130,695 + +1.2 130,695 + +0.8 130,696 - +0.4 130,696 - -0.0 130,696 - -0.1 130,696 - -0.6 130,711 + +0.4 130,711 + +0.2 130,711 + +0.6 130,711 + -2.0 130,711 + +0.9 130,712 - +0.4 130,712 - +0.2 130,712 - +0.0 130,712 - -0.1 130,820 + -1.3 130,820 + -1.4 130,862 + +0.6 130,862 + -0.5 130,862 + +0.1 130,862 + +1.0 130,862 + +0.1 130,862 + +0.3 131,097 + -0.6 131,097 + +1.2 131,287 - +0.2 132,853 + LRK55_RS00585 0.79 -0.4 132,853 + LRK55_RS00585 0.79 +0.8 132,854 - LRK55_RS00585 0.79 +0.3
Or see this region's nucleotide sequence