Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS18825

Experiment: no stress control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntLRK55_RS18820 and LRK55_RS18825 overlap by 4 nucleotidesLRK55_RS18825 and LRK55_RS18830 overlap by 4 nucleotides LRK55_RS18820: LRK55_RS18820 - efflux RND transporter permease subunit, at 99,965 to 103,141 _RS18820 LRK55_RS18825: LRK55_RS18825 - efflux RND transporter periplasmic adaptor subunit, at 103,138 to 104,430 _RS18825 LRK55_RS18830: LRK55_RS18830 - TolC family protein, at 104,427 to 105,701 _RS18830 Position (kb) 103 104 105Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 102.168 kb on + strand, within LRK55_RS18820at 102.168 kb on + strand, within LRK55_RS18820at 102.168 kb on + strand, within LRK55_RS18820at 102.169 kb on - strand, within LRK55_RS18820at 102.169 kb on - strand, within LRK55_RS18820at 102.169 kb on - strand, within LRK55_RS18820at 102.172 kb on + strand, within LRK55_RS18820at 102.172 kb on + strand, within LRK55_RS18820at 102.172 kb on + strand, within LRK55_RS18820at 102.172 kb on + strand, within LRK55_RS18820at 102.173 kb on - strand, within LRK55_RS18820at 102.173 kb on - strand, within LRK55_RS18820at 102.377 kb on + strand, within LRK55_RS18820at 102.377 kb on + strand, within LRK55_RS18820at 102.674 kb on + strand, within LRK55_RS18820at 102.675 kb on - strand, within LRK55_RS18820at 102.804 kb on + strand, within LRK55_RS18820at 102.832 kb on - strandat 102.867 kb on + strandat 102.868 kb on - strandat 102.868 kb on - strandat 102.868 kb on - strandat 102.868 kb on - strandat 102.868 kb on - strandat 102.896 kb on + strandat 102.896 kb on + strandat 102.896 kb on + strandat 102.896 kb on + strandat 102.897 kb on - strandat 102.897 kb on - strandat 102.963 kb on - strandat 102.963 kb on - strandat 103.094 kb on + strandat 103.094 kb on + strandat 103.095 kb on - strandat 103.277 kb on - strand, within LRK55_RS18825at 103.277 kb on - strand, within LRK55_RS18825at 103.277 kb on - strand, within LRK55_RS18825at 103.315 kb on - strand, within LRK55_RS18825at 103.338 kb on + strand, within LRK55_RS18825at 103.514 kb on - strand, within LRK55_RS18825at 103.916 kb on + strand, within LRK55_RS18825at 103.917 kb on - strand, within LRK55_RS18825at 103.988 kb on + strand, within LRK55_RS18825at 103.988 kb on + strand, within LRK55_RS18825at 103.988 kb on + strand, within LRK55_RS18825at 103.988 kb on + strand, within LRK55_RS18825at 103.989 kb on - strand, within LRK55_RS18825at 104.196 kb on - strand, within LRK55_RS18825at 104.313 kb on + strandat 104.366 kb on + strandat 104.366 kb on + strandat 104.367 kb on - strandat 104.407 kb on + strandat 104.408 kb on - strandat 104.413 kb on + strandat 104.447 kb on + strandat 104.457 kb on - strandat 104.506 kb on + strandat 104.507 kb on - strandat 104.507 kb on - strandat 104.507 kb on - strandat 104.507 kb on - strandat 104.632 kb on + strand, within LRK55_RS18830at 104.633 kb on - strand, within LRK55_RS18830at 104.851 kb on + strand, within LRK55_RS18830at 104.851 kb on + strand, within LRK55_RS18830at 104.851 kb on + strand, within LRK55_RS18830at 104.851 kb on + strand, within LRK55_RS18830at 104.852 kb on - strand, within LRK55_RS18830at 104.852 kb on - strand, within LRK55_RS18830at 104.852 kb on - strand, within LRK55_RS18830at 104.852 kb on - strand, within LRK55_RS18830at 105.106 kb on + strand, within LRK55_RS18830at 105.252 kb on + strand, within LRK55_RS18830at 105.252 kb on + strand, within LRK55_RS18830at 105.252 kb on + strand, within LRK55_RS18830at 105.252 kb on + strand, within LRK55_RS18830at 105.252 kb on + strand, within LRK55_RS18830at 105.252 kb on + strand, within LRK55_RS18830at 105.252 kb on + strand, within LRK55_RS18830at 105.252 kb on + strand, within LRK55_RS18830at 105.253 kb on - strand, within LRK55_RS18830at 105.253 kb on - strand, within LRK55_RS18830at 105.253 kb on - strand, within LRK55_RS18830at 105.253 kb on - strand, within LRK55_RS18830at 105.253 kb on - strand, within LRK55_RS18830at 105.253 kb on - strand, within LRK55_RS18830

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
remove
102,168 + LRK55_RS18820 0.69 -1.3
102,168 + LRK55_RS18820 0.69 -0.5
102,168 + LRK55_RS18820 0.69 +0.4
102,169 - LRK55_RS18820 0.69 -1.0
102,169 - LRK55_RS18820 0.69 +0.8
102,169 - LRK55_RS18820 0.69 -0.9
102,172 + LRK55_RS18820 0.69 +0.9
102,172 + LRK55_RS18820 0.69 +0.4
102,172 + LRK55_RS18820 0.69 -0.3
102,172 + LRK55_RS18820 0.69 -1.4
102,173 - LRK55_RS18820 0.69 -0.3
102,173 - LRK55_RS18820 0.69 +1.2
102,377 + LRK55_RS18820 0.76 -0.1
102,377 + LRK55_RS18820 0.76 +0.5
102,674 + LRK55_RS18820 0.85 +0.9
102,675 - LRK55_RS18820 0.85 -0.7
102,804 + LRK55_RS18820 0.89 -0.1
102,832 - +0.1
102,867 + -0.4
102,868 - +0.8
102,868 - -0.3
102,868 - +2.8
102,868 - -0.3
102,868 - -0.9
102,896 + +0.2
102,896 + +0.6
102,896 + +0.3
102,896 + -0.2
102,897 - -2.9
102,897 - +0.2
102,963 - -0.1
102,963 - -1.3
103,094 + -1.1
103,094 + -1.1
103,095 - +0.3
103,277 - LRK55_RS18825 0.11 -0.4
103,277 - LRK55_RS18825 0.11 +0.0
103,277 - LRK55_RS18825 0.11 +0.8
103,315 - LRK55_RS18825 0.14 +0.1
103,338 + LRK55_RS18825 0.15 +1.0
103,514 - LRK55_RS18825 0.29 +0.2
103,916 + LRK55_RS18825 0.60 +0.3
103,917 - LRK55_RS18825 0.60 +0.7
103,988 + LRK55_RS18825 0.66 -0.2
103,988 + LRK55_RS18825 0.66 -0.1
103,988 + LRK55_RS18825 0.66 +0.4
103,988 + LRK55_RS18825 0.66 -0.2
103,989 - LRK55_RS18825 0.66 +0.0
104,196 - LRK55_RS18825 0.82 -1.6
104,313 + +0.2
104,366 + -0.2
104,366 + -0.1
104,367 - +0.2
104,407 + +0.7
104,408 - +0.7
104,413 + -2.9
104,447 + -0.0
104,457 - -0.3
104,506 + -0.0
104,507 - -0.9
104,507 - -1.0
104,507 - -0.2
104,507 - -1.7
104,632 + LRK55_RS18830 0.16 -0.5
104,633 - LRK55_RS18830 0.16 -1.0
104,851 + LRK55_RS18830 0.33 -0.4
104,851 + LRK55_RS18830 0.33 +0.1
104,851 + LRK55_RS18830 0.33 -0.2
104,851 + LRK55_RS18830 0.33 +0.3
104,852 - LRK55_RS18830 0.33 -0.0
104,852 - LRK55_RS18830 0.33 -1.2
104,852 - LRK55_RS18830 0.33 +0.2
104,852 - LRK55_RS18830 0.33 +0.4
105,106 + LRK55_RS18830 0.53 -0.9
105,252 + LRK55_RS18830 0.65 +0.3
105,252 + LRK55_RS18830 0.65 +0.7
105,252 + LRK55_RS18830 0.65 -0.1
105,252 + LRK55_RS18830 0.65 -0.4
105,252 + LRK55_RS18830 0.65 +0.8
105,252 + LRK55_RS18830 0.65 +0.9
105,252 + LRK55_RS18830 0.65 -1.0
105,252 + LRK55_RS18830 0.65 +0.4
105,253 - LRK55_RS18830 0.65 +0.5
105,253 - LRK55_RS18830 0.65 -1.8
105,253 - LRK55_RS18830 0.65 +0.0
105,253 - LRK55_RS18830 0.65 +0.4
105,253 - LRK55_RS18830 0.65 +0.1
105,253 - LRK55_RS18830 0.65 +0.3

Or see this region's nucleotide sequence