Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS18315

Experiment: no stress control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	no stress control
3,967,899	+		LRK55_RS18310	0.46	+0.1
3,967,899	+		LRK55_RS18310	0.46	-0.6
3,967,899	+		LRK55_RS18310	0.46	+0.9
3,967,899	+		LRK55_RS18310	0.46	+0.8
3,967,930	-		LRK55_RS18310	0.48	-0.0
3,968,045	+		LRK55_RS18310	0.54	+0.7
3,968,045	+		LRK55_RS18310	0.54	+0.7
3,968,045	+		LRK55_RS18310	0.54	-0.2
3,968,045	+		LRK55_RS18310	0.54	-1.3
3,968,045	+		LRK55_RS18310	0.54	+0.2
3,968,045	+		LRK55_RS18310	0.54	+0.3
3,968,045	+		LRK55_RS18310	0.54	-0.4
3,968,045	+		LRK55_RS18310	0.54	-0.8
3,968,045	+		LRK55_RS18310	0.54	+0.2
3,968,046	-		LRK55_RS18310	0.54	-0.1
3,968,046	-		LRK55_RS18310	0.54	-0.2
3,968,046	-		LRK55_RS18310	0.54	+0.1
3,968,084	+		LRK55_RS18310	0.56	-0.4
3,968,085	-		LRK55_RS18310	0.56	-0.1
3,968,085	-		LRK55_RS18310	0.56	-0.9
3,968,231	+		LRK55_RS18310	0.65	+0.4
3,968,232	-		LRK55_RS18310	0.65	+0.7
3,968,232	-		LRK55_RS18310	0.65	+1.3
3,968,232	-		LRK55_RS18310	0.65	-0.3
3,968,246	+		LRK55_RS18310	0.65	+0.3
3,968,246	+		LRK55_RS18310	0.65	+0.3
3,968,246	+		LRK55_RS18310	0.65	+0.3
3,968,246	+		LRK55_RS18310	0.65	-0.1
3,968,246	+		LRK55_RS18310	0.65	-2.1
3,968,247	-		LRK55_RS18310	0.66	+0.6
3,968,247	-		LRK55_RS18310	0.66	+0.7
3,968,247	-		LRK55_RS18310	0.66	-0.2
3,968,277	+		LRK55_RS18310	0.67	-2.9
3,968,278	-		LRK55_RS18310	0.67	+1.9
3,968,278	-		LRK55_RS18310	0.67	-0.0
3,968,278	-		LRK55_RS18310	0.67	-0.7
3,968,278	-		LRK55_RS18310	0.67	-0.6
3,968,289	+		LRK55_RS18310	0.68	-0.0
3,968,289	+		LRK55_RS18310	0.68	+1.9
3,968,362	+		LRK55_RS18310	0.72	-0.1
3,968,362	+		LRK55_RS18310	0.72	-0.5
3,968,362	+		LRK55_RS18310	0.72	+0.7
3,968,363	-		LRK55_RS18310	0.72	-1.1
3,968,399	+		LRK55_RS18310	0.74	+1.5
3,968,399	+		LRK55_RS18310	0.74	-1.7
3,968,399	+		LRK55_RS18310	0.74	-1.0
3,968,399	+		LRK55_RS18310	0.74	-0.7
3,968,399	+		LRK55_RS18310	0.74	+0.4
3,968,399	+		LRK55_RS18310	0.74	+0.6
3,968,399	+		LRK55_RS18310	0.74	-1.6
3,968,399	+		LRK55_RS18310	0.74	-1.5
3,968,400	-		LRK55_RS18310	0.74	+1.2
3,968,400	-		LRK55_RS18310	0.74	-1.6
3,968,400	-		LRK55_RS18310	0.74	-0.4
3,968,400	-		LRK55_RS18310	0.74	-0.6
3,968,400	-		LRK55_RS18310	0.74	+0.1
3,968,400	-		LRK55_RS18310	0.74	+0.2
3,968,400	-		LRK55_RS18310	0.74	-0.0
3,968,400	-		LRK55_RS18310	0.74	-0.9
3,968,400	-		LRK55_RS18310	0.74	-0.5
3,968,479	+		LRK55_RS18310	0.79	+0.2
3,968,479	+		LRK55_RS18310	0.79	-0.2
3,968,479	+		LRK55_RS18310	0.79	+0.6
3,968,479	+		LRK55_RS18310	0.79	+0.1
3,968,479	+		LRK55_RS18310	0.79	+0.6
3,968,479	+		LRK55_RS18310	0.79	-2.5
3,968,480	-		LRK55_RS18310	0.79	-1.0
3,968,480	-		LRK55_RS18310	0.79	-0.3
3,968,480	-		LRK55_RS18310	0.79	-1.0
3,968,480	-		LRK55_RS18310	0.79	+0.6
3,968,480	-		LRK55_RS18310	0.79	-1.1
3,968,480	-		LRK55_RS18310	0.79	-0.6
3,968,480	-		LRK55_RS18310	0.79	-0.8
3,968,480	-		LRK55_RS18310	0.79	+0.9
3,968,482	-		LRK55_RS18310	0.79	+0.2
3,968,482	-		LRK55_RS18310	0.79	-1.1
3,968,615	+		LRK55_RS18310	0.86	+0.7
3,968,615	+		LRK55_RS18310	0.86	-2.9
3,968,616	-		LRK55_RS18310	0.86	-0.7
3,968,616	-		LRK55_RS18310	0.86	-0.2
3,968,616	-		LRK55_RS18310	0.86	-1.1
3,968,616	-		LRK55_RS18310	0.86	-0.4
3,968,616	-		LRK55_RS18310	0.86	-2.2
3,968,616	-		LRK55_RS18310	0.86	+0.8
3,968,616	-		LRK55_RS18310	0.86	+0.8
3,968,616	-		LRK55_RS18310	0.86	+0.6
3,968,616	-		LRK55_RS18310	0.86	+0.5
3,968,616	-		LRK55_RS18310	0.86	+0.4
3,968,777	+				-2.0
3,968,777	+				+0.9
3,968,777	+				-0.2
3,968,777	+				+0.1
3,968,777	+				-0.3
3,968,777	+				-0.5
3,968,777	+				+0.4
3,968,777	+				+0.7
3,968,777	+				-2.5
3,968,777	+				-2.8
3,968,777	+				+0.6
3,968,778	-				-1.9
3,968,778	-				-0.4
3,968,778	-				+0.1
3,968,778	-				+0.1
3,968,778	-				+0.7
3,968,778	-				+1.1
3,968,778	-				-0.7
3,968,778	-				+0.5
3,968,778	-				-1.8
3,968,778	-				-0.0
3,968,778	-				+0.4
3,968,778	-				-1.8
3,968,778	-				+0.7
3,968,778	-				-0.5
3,968,779	+				-0.7
3,968,780	-				+0.4
3,968,780	-				-0.5
3,968,780	-				-1.0
3,968,780	-				-0.1
3,968,831	+				+0.7
3,968,832	-				-0.3
3,968,894	+				+1.5
3,968,894	+				+0.4
3,968,894	+				-0.0
3,968,894	+				+0.2
3,968,894	+				-2.6
3,968,895	-				+0.1
3,968,910	+				+0.2
3,968,910	+				-0.7
3,968,910	+				+0.2
3,968,911	-				-0.3
3,968,911	-				-0.5
3,968,911	-				-0.0
3,968,962	+		LRK55_RS18315	0.12	+0.1
3,968,962	+		LRK55_RS18315	0.12	+0.9
3,968,962	+		LRK55_RS18315	0.12	+0.4
3,968,962	+		LRK55_RS18315	0.12	+0.2
3,968,963	-		LRK55_RS18315	0.12	-0.4
3,968,963	-		LRK55_RS18315	0.12	+0.0
3,968,963	-		LRK55_RS18315	0.12	-1.1
3,968,963	-		LRK55_RS18315	0.12	-0.7
3,968,963	-		LRK55_RS18315	0.12	-1.7
3,968,963	-		LRK55_RS18315	0.12	+0.5
3,969,066	+		LRK55_RS18315	0.32	+0.4
3,969,106	+		LRK55_RS18315	0.40	+0.2
3,969,107	-		LRK55_RS18315	0.40	-0.1
3,969,221	+		LRK55_RS18315	0.62	+0.1
3,969,222	-		LRK55_RS18315	0.62	-0.1
3,969,241	+		LRK55_RS18315	0.66	-0.3
3,969,241	+		LRK55_RS18315	0.66	+0.2
3,969,241	+		LRK55_RS18315	0.66	-0.3
3,969,241	+		LRK55_RS18315	0.66	-1.7
3,969,241	+		LRK55_RS18315	0.66	-0.3
3,969,241	+		LRK55_RS18315	0.66	-0.0
3,969,241	+		LRK55_RS18315	0.66	+0.6
3,969,242	-		LRK55_RS18315	0.66	+0.8
3,969,242	-		LRK55_RS18315	0.66	+0.2
3,969,271	-		LRK55_RS18315	0.71	+0.7
3,969,271	-		LRK55_RS18315	0.71	+0.3
3,969,271	-		LRK55_RS18315	0.71	-0.5
3,969,387	+				+1.0
3,969,387	+				+0.7
3,969,387	+				+0.2
3,969,387	+				+0.4
3,969,387	+				-2.3
3,969,387	+				-0.8
3,969,387	+				-0.0
3,969,388	-				-0.2
3,969,388	-				-0.6
3,969,414	+				-1.6
3,969,464	+				-0.5
3,969,511	+				+0.4
3,969,511	+				+0.5
3,969,511	+				-0.5
3,969,512	-				-0.2
3,969,512	-				-0.4
3,969,512	-				-0.6
3,969,512	-				+0.5
3,969,512	-				+0.6
3,969,512	-				-1.3
3,969,512	-				+0.7
3,969,512	-				+0.0
3,969,512	-				-1.7
3,969,550	+				-0.2
3,969,552	+				+0.5
3,969,552	+				-0.3
3,969,552	+				+0.5
3,969,553	-				-0.0
3,969,553	-				+0.2
3,969,553	-				+0.1
3,969,553	-				-1.0
3,969,553	-				+0.3
3,969,553	-				+0.9
3,969,595	-				+1.5
3,969,595	-				-0.7
3,969,595	-				+0.9
3,969,595	-				-1.3
3,969,608	+				-0.3
3,969,608	+				+0.1
3,969,608	+				-0.6
3,969,608	+				-0.1
3,969,608	+				-0.6
3,969,608	+				-0.1
3,969,609	-				-0.2
3,969,609	-				+0.3
3,969,609	-				+1.2
3,969,609	-				+0.2
3,969,609	-				-0.9
3,969,609	-				-1.2
3,969,636	+		LRK55_RS18320	0.10	+0.5
3,969,636	+		LRK55_RS18320	0.10	-0.1
3,969,636	+		LRK55_RS18320	0.10	-0.5
3,969,636	+		LRK55_RS18320	0.10	-1.9
3,969,636	+		LRK55_RS18320	0.10	+0.0
3,969,636	+		LRK55_RS18320	0.10	+0.5
3,969,636	+		LRK55_RS18320	0.10	-0.9
3,969,636	+		LRK55_RS18320	0.10	-2.2
3,969,636	+		LRK55_RS18320	0.10	-2.9
3,969,637	-		LRK55_RS18320	0.10	-1.0
3,969,637	-		LRK55_RS18320	0.10	+1.4
3,969,637	-		LRK55_RS18320	0.10	-2.5
3,969,637	-		LRK55_RS18320	0.10	+0.6
3,969,637	-		LRK55_RS18320	0.10	+0.4
3,969,637	-		LRK55_RS18320	0.10	-0.1
3,969,637	-		LRK55_RS18320	0.10	+1.1
3,969,637	-		LRK55_RS18320	0.10	-0.1
3,969,704	+		LRK55_RS18320	0.13	+0.1
3,969,705	-		LRK55_RS18320	0.13	-0.4
3,969,705	-		LRK55_RS18320	0.13	-1.0
3,969,705	-		LRK55_RS18320	0.13	-0.2
3,969,710	+		LRK55_RS18320	0.14	-0.7
3,969,710	+		LRK55_RS18320	0.14	+0.8
3,969,710	+		LRK55_RS18320	0.14	+0.2
3,969,711	-		LRK55_RS18320	0.14	-1.8
3,969,711	-		LRK55_RS18320	0.14	+0.0
3,969,711	-		LRK55_RS18320	0.14	-0.1
3,969,711	-		LRK55_RS18320	0.14	-1.1
3,969,842	+		LRK55_RS18320	0.20	-0.2
3,969,842	+		LRK55_RS18320	0.20	+0.2
3,969,842	+		LRK55_RS18320	0.20	-0.6
3,969,842	+		LRK55_RS18320	0.20	-1.6
3,969,842	+		LRK55_RS18320	0.20	+0.9
3,969,842	+		LRK55_RS18320	0.20	+0.1
3,969,842	+		LRK55_RS18320	0.20	+0.1
3,969,842	+		LRK55_RS18320	0.20	-0.8
3,969,842	+		LRK55_RS18320	0.20	+0.2
3,969,843	-		LRK55_RS18320	0.20	-1.1
3,969,843	-		LRK55_RS18320	0.20	-1.0
3,969,843	-		LRK55_RS18320	0.20	-0.3
3,969,843	-		LRK55_RS18320	0.20	+0.2
3,969,843	-		LRK55_RS18320	0.20	-0.0
3,969,843	-		LRK55_RS18320	0.20	-0.6
3,969,843	-		LRK55_RS18320	0.20	+0.2
3,969,843	-		LRK55_RS18320	0.20	-0.2
3,969,843	-		LRK55_RS18320	0.20	+0.4
3,969,843	-		LRK55_RS18320	0.20	-0.0
3,969,843	-		LRK55_RS18320	0.20	-0.7
3,969,843	-		LRK55_RS18320	0.20	+1.3
3,969,895	-		LRK55_RS18320	0.22	-0.7
3,969,966	+		LRK55_RS18320	0.25	+0.0
3,969,966	+		LRK55_RS18320	0.25	+0.5
3,969,966	+		LRK55_RS18320	0.25	-0.5
3,969,966	+		LRK55_RS18320	0.25	-1.6
3,969,966	+		LRK55_RS18320	0.25	+0.2
3,969,966	+		LRK55_RS18320	0.25	-0.1
3,969,966	+		LRK55_RS18320	0.25	-0.9
3,969,967	-		LRK55_RS18320	0.26	+1.0
3,969,967	-		LRK55_RS18320	0.26	-1.9
3,969,967	-		LRK55_RS18320	0.26	-1.2
3,969,967	-		LRK55_RS18320	0.26	-0.4
3,969,967	-		LRK55_RS18320	0.26	-0.9
3,969,967	-		LRK55_RS18320	0.26	-0.5
3,969,967	-		LRK55_RS18320	0.26	+0.4
3,969,967	-		LRK55_RS18320	0.26	-0.8
3,969,967	-		LRK55_RS18320	0.26	-0.3
3,970,050	+		LRK55_RS18320	0.29	-0.6
3,970,050	+		LRK55_RS18320	0.29	-0.1
3,970,050	+		LRK55_RS18320	0.29	+0.6
3,970,050	+		LRK55_RS18320	0.29	+1.1
3,970,051	-		LRK55_RS18320	0.29	+0.4
3,970,051	-		LRK55_RS18320	0.29	-0.7
3,970,051	-		LRK55_RS18320	0.29	-0.5
3,970,051	-		LRK55_RS18320	0.29	-1.6
3,970,051	-		LRK55_RS18320	0.29	-0.3
3,970,051	-		LRK55_RS18320	0.29	-1.5
3,970,060	-		LRK55_RS18320	0.30	-0.3
3,970,060	-		LRK55_RS18320	0.30	+0.5
3,970,066	+		LRK55_RS18320	0.30	-1.5
3,970,066	+		LRK55_RS18320	0.30	+1.6
3,970,066	+		LRK55_RS18320	0.30	+0.1
3,970,067	-		LRK55_RS18320	0.30	-0.8
3,970,067	-		LRK55_RS18320	0.30	-0.8
3,970,067	-		LRK55_RS18320	0.30	-0.0
3,970,177	+		LRK55_RS18320	0.35	-0.7
3,970,178	-		LRK55_RS18320	0.35	-1.5
3,970,178	-		LRK55_RS18320	0.35	-0.0
3,970,241	-		LRK55_RS18320	0.38	-0.1
3,970,245	+		LRK55_RS18320	0.38	-0.8
3,970,245	+		LRK55_RS18320	0.38	-0.3
3,970,245	+		LRK55_RS18320	0.38	-0.1
3,970,246	-		LRK55_RS18320	0.38	-0.1
3,970,283	-		LRK55_RS18320	0.40	-0.6
3,970,283	-		LRK55_RS18320	0.40	+0.8
3,970,313	+		LRK55_RS18320	0.41	+0.6
3,970,314	-		LRK55_RS18320	0.42	-0.1
3,970,337	+		LRK55_RS18320	0.43	+0.3
3,970,337	+		LRK55_RS18320	0.43	+0.2
3,970,337	+		LRK55_RS18320	0.43	-0.2
3,970,337	+		LRK55_RS18320	0.43	+0.0
3,970,338	-		LRK55_RS18320	0.43	+0.0
3,970,338	-		LRK55_RS18320	0.43	-0.5
3,970,338	-		LRK55_RS18320	0.43	+1.0
3,970,338	-		LRK55_RS18320	0.43	+0.2
3,970,338	-		LRK55_RS18320	0.43	-0.2