Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS11765

Experiment: no stress control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	no stress control
2,595,111	+		LRK55_RS11755	0.69	+0.9
2,595,111	+		LRK55_RS11755	0.69	+0.1
2,595,112	-		LRK55_RS11755	0.69	+1.0
2,595,112	-		LRK55_RS11755	0.69	-0.8
2,595,112	-		LRK55_RS11755	0.69	-1.3
2,595,112	-		LRK55_RS11755	0.69	-0.2
2,595,112	-		LRK55_RS11755	0.69	+0.9
2,595,177	+		LRK55_RS11755	0.76	+0.1
2,595,178	-		LRK55_RS11755	0.76	+0.8
2,595,178	-		LRK55_RS11755	0.76	+0.7
2,595,195	+		LRK55_RS11755	0.78	-0.4
2,595,195	+		LRK55_RS11755	0.78	-0.9
2,595,195	+		LRK55_RS11755	0.78	-0.2
2,595,195	+		LRK55_RS11755	0.78	+0.8
2,595,195	+		LRK55_RS11755	0.78	-0.9
2,595,196	-		LRK55_RS11755	0.78	+0.5
2,595,196	-		LRK55_RS11755	0.78	-0.3
2,595,196	-		LRK55_RS11755	0.78	+0.7
2,595,213	+		LRK55_RS11755	0.80	-0.5
2,595,213	+		LRK55_RS11755	0.80	-1.3
2,595,213	+		LRK55_RS11755	0.80	-2.7
2,595,213	+		LRK55_RS11755	0.80	+0.4
2,595,213	+		LRK55_RS11755	0.80	-0.4
2,595,213	+		LRK55_RS11755	0.80	-1.4
2,595,213	+		LRK55_RS11755	0.80	+1.1
2,595,213	+		LRK55_RS11755	0.80	-1.3
2,595,213	+		LRK55_RS11755	0.80	+1.0
2,595,213	+		LRK55_RS11755	0.80	-1.2
2,595,213	+		LRK55_RS11755	0.80	-2.2
2,595,213	+		LRK55_RS11755	0.80	-0.2
2,595,213	+		LRK55_RS11755	0.80	+1.4
2,595,213	+		LRK55_RS11755	0.80	+0.0
2,595,214	-		LRK55_RS11755	0.80	+0.0
2,595,214	-		LRK55_RS11755	0.80	+0.3
2,595,214	-		LRK55_RS11755	0.80	-0.2
2,595,214	-		LRK55_RS11755	0.80	+0.5
2,595,214	-		LRK55_RS11755	0.80	-0.2
2,595,214	-		LRK55_RS11755	0.80	-1.9
2,595,214	-		LRK55_RS11755	0.80	+0.1
2,595,214	-		LRK55_RS11755	0.80	+0.1
2,595,214	-		LRK55_RS11755	0.80	+0.2
2,595,214	-		LRK55_RS11755	0.80	-0.1
2,595,214	-		LRK55_RS11755	0.80	-1.8
2,595,214	-		LRK55_RS11755	0.80	-0.1
2,595,214	-		LRK55_RS11755	0.80	-1.3
2,595,214	-		LRK55_RS11755	0.80	+0.8
2,595,214	-		LRK55_RS11755	0.80	-0.5
2,595,214	-		LRK55_RS11755	0.80	+1.1
2,595,214	-		LRK55_RS11755	0.80	+0.4
2,595,214	-		LRK55_RS11755	0.80	-1.9
2,595,214	-		LRK55_RS11755	0.80	+0.0
2,595,214	-		LRK55_RS11755	0.80	+0.1
2,595,214	-		LRK55_RS11755	0.80	-0.4
2,595,270	+		LRK55_RS11755	0.86	-0.1
2,595,270	+		LRK55_RS11755	0.86	+2.1
2,595,270	+		LRK55_RS11755	0.86	+0.1
2,595,271	-		LRK55_RS11755	0.86	-0.3
2,595,271	-		LRK55_RS11755	0.86	-0.1
2,595,303	+		LRK55_RS11755	0.90	+0.7
2,595,427	+				-0.9
2,595,428	-				+1.0
2,595,428	-				+0.6
2,595,428	-				+0.1
2,595,428	-				-0.7
2,595,997	-				-0.2
2,596,052	+				-0.8
2,596,052	+				+0.7
2,596,053	-				+1.0
2,596,053	-				+0.9
2,596,053	-				+0.1
2,596,085	+				-0.4
2,596,119	+				+0.0
2,596,119	+				-2.1
2,596,119	+				-0.6
2,596,119	+				-1.0
2,596,120	-				-0.2
2,596,371	+		LRK55_RS11765	0.37	+0.1
2,596,372	-		LRK55_RS11765	0.37	-0.6
2,596,392	+		LRK55_RS11765	0.39	-0.3
2,596,392	+		LRK55_RS11765	0.39	+0.3
2,596,392	+		LRK55_RS11765	0.39	-0.2
2,596,392	+		LRK55_RS11765	0.39	-0.7
2,596,392	+		LRK55_RS11765	0.39	-0.3
2,596,392	+		LRK55_RS11765	0.39	-0.1
2,596,392	+		LRK55_RS11765	0.39	-1.9
2,596,392	+		LRK55_RS11765	0.39	+1.6
2,596,393	-		LRK55_RS11765	0.40	+0.5
2,596,393	-		LRK55_RS11765	0.40	+0.0
2,596,393	-		LRK55_RS11765	0.40	-0.1
2,596,393	-		LRK55_RS11765	0.40	-1.0
2,596,488	+		LRK55_RS11765	0.51	-0.4
2,596,558	-		LRK55_RS11765	0.60	-0.8
2,596,749	+		LRK55_RS11765	0.83	-0.1
2,596,749	+		LRK55_RS11765	0.83	-0.6
2,596,749	+		LRK55_RS11765	0.83	+2.1
2,596,750	-		LRK55_RS11765	0.83	-2.6
2,596,750	-		LRK55_RS11765	0.83	-1.1
2,596,750	-		LRK55_RS11765	0.83	-0.5
2,596,750	-		LRK55_RS11765	0.83	-0.1
2,596,792	-		LRK55_RS11765	0.88	-0.4
2,596,792	-		LRK55_RS11765	0.88	-0.7
2,596,792	-		LRK55_RS11765	0.88	-2.4
2,596,792	-		LRK55_RS11765	0.88	-0.9
2,596,923	+				+0.4
2,596,923	+				+0.2
2,596,923	+				-0.4
2,596,924	-				+0.2
2,596,924	-				-0.9
2,596,924	-				-1.1
2,596,925	+				-0.1
2,596,925	+				+0.1
2,596,925	+				+0.7
2,596,925	+				+0.6
2,596,925	+				-0.9
2,596,925	+				+1.1
2,596,925	+				-1.9
2,596,925	+				+0.4
2,596,925	+				-0.1
2,596,926	-				+0.2
2,596,926	-				-1.4
2,596,926	-				-0.3
2,596,926	-				+0.4
2,596,926	-				+0.2
2,596,927	+				+0.5
2,596,927	+				+0.1
2,596,927	+				+0.2
2,596,927	+				+0.2
2,596,927	+				-0.3
2,596,928	-				+0.3
2,596,928	-				+0.5
2,596,928	-				-2.3
2,596,928	-				-0.3
2,596,928	-				-0.0
2,596,951	+				-0.2
2,596,951	+				+0.2
2,596,952	-				-0.3
2,596,952	-				+0.6
2,596,952	-				-0.8
2,597,096	+				+0.6
2,597,096	+				-0.3
2,597,096	+				-0.3
2,597,096	+				-2.0
2,597,097	-				+0.1
2,597,097	-				+0.7
2,597,097	-				-0.2
2,597,097	-				-0.6
2,597,109	-				-0.5
2,597,109	-				+0.8
2,597,109	-				+0.6
2,597,109	-				+0.4
2,597,109	-				+1.2
2,597,192	+				+0.1
2,597,192	+				+0.4
2,597,192	+				-1.7
2,597,192	+				+0.4
2,597,192	+				-0.1
2,597,192	+				-0.7
2,597,192	+				-0.8
2,597,192	+				-0.4
2,597,192	+				-1.4
2,597,192	+				+0.6
2,597,192	+				-1.7
2,597,192	+				+0.8
2,597,192	+				-0.5
2,597,192	+				+0.7
2,597,192	+				+1.0
2,597,192	+				-0.5
2,597,192	+				-1.0
2,597,192	+				-0.0
2,597,192	+				+0.0
2,597,192	+				+0.5
2,597,193	-				+0.1
2,597,193	-				+0.6
2,597,193	-				+0.3
2,597,193	-				-0.4
2,597,193	-				-1.1
2,597,193	-				-0.0
2,597,193	-				-0.6
2,597,193	-				-0.1
2,597,193	-				-0.3
2,597,193	-				-0.0
2,597,193	-				+0.3
2,597,193	-				-0.2
2,597,193	-				-0.3
2,597,193	-				+0.8
2,597,390	+		LRK55_RS11770	0.17	-0.9
2,597,390	+		LRK55_RS11770	0.17	-0.3
2,597,390	+		LRK55_RS11770	0.17	+0.8
2,597,390	+		LRK55_RS11770	0.17	-0.1
2,597,390	+		LRK55_RS11770	0.17	-0.3
2,597,390	+		LRK55_RS11770	0.17	+2.4
2,597,390	+		LRK55_RS11770	0.17	-0.5
2,597,390	+		LRK55_RS11770	0.17	-0.3
2,597,390	+		LRK55_RS11770	0.17	-0.6
2,597,391	-		LRK55_RS11770	0.17	-1.1
2,597,391	-		LRK55_RS11770	0.17	+1.3
2,597,391	-		LRK55_RS11770	0.17	+0.2
2,597,391	-		LRK55_RS11770	0.17	-0.9
2,597,391	-		LRK55_RS11770	0.17	-0.0
2,597,391	-		LRK55_RS11770	0.17	+2.3
2,597,391	-		LRK55_RS11770	0.17	-0.6
2,597,391	-		LRK55_RS11770	0.17	+0.1
2,597,391	-		LRK55_RS11770	0.17	+2.6
2,597,391	-		LRK55_RS11770	0.17	+0.6
2,597,391	-		LRK55_RS11770	0.17	+0.1
2,597,477	+		LRK55_RS11770	0.22	-0.7
2,597,477	+		LRK55_RS11770	0.22	+0.2
2,597,477	+		LRK55_RS11770	0.22	-1.0
2,597,478	-		LRK55_RS11770	0.23	-0.0
2,597,478	-		LRK55_RS11770	0.23	-0.6
2,597,478	-		LRK55_RS11770	0.23	-0.6
2,597,651	+		LRK55_RS11770	0.33	-2.0
2,597,651	+		LRK55_RS11770	0.33	-1.8
2,597,651	+		LRK55_RS11770	0.33	+0.8
2,597,652	-		LRK55_RS11770	0.33	+0.6
2,597,652	-		LRK55_RS11770	0.33	-0.1
2,597,872	-		LRK55_RS11770	0.46	-0.2
2,597,873	+		LRK55_RS11770	0.46	-0.4
2,597,873	+		LRK55_RS11770	0.46	-0.0
2,597,879	+		LRK55_RS11770	0.46	-0.0
2,597,879	+		LRK55_RS11770	0.46	+0.7
2,597,879	+		LRK55_RS11770	0.46	-0.3
2,597,879	+		LRK55_RS11770	0.46	-0.6
2,597,879	+		LRK55_RS11770	0.46	-0.5
2,597,879	+		LRK55_RS11770	0.46	+0.7
2,597,879	+		LRK55_RS11770	0.46	-1.0
2,597,879	+		LRK55_RS11770	0.46	+0.1
2,597,879	+		LRK55_RS11770	0.46	-0.6
2,597,879	+		LRK55_RS11770	0.46	-0.4
2,597,879	+		LRK55_RS11770	0.46	-2.7
2,597,879	+		LRK55_RS11770	0.46	-0.4
2,597,879	+		LRK55_RS11770	0.46	-0.0
2,597,879	+		LRK55_RS11770	0.46	+1.0
2,597,879	+		LRK55_RS11770	0.46	+0.7
2,597,879	+		LRK55_RS11770	0.46	+0.6
2,597,880	-		LRK55_RS11770	0.46	-0.2
2,597,880	-		LRK55_RS11770	0.46	-0.4
2,597,880	-		LRK55_RS11770	0.46	+0.1
2,597,880	-		LRK55_RS11770	0.46	-0.9
2,597,880	-		LRK55_RS11770	0.46	-0.4
2,597,880	-		LRK55_RS11770	0.46	-1.9
2,597,880	-		LRK55_RS11770	0.46	+0.4
2,597,880	-		LRK55_RS11770	0.46	-0.4
2,597,880	-		LRK55_RS11770	0.46	+0.1
2,597,880	-		LRK55_RS11770	0.46	-1.2