Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS11175

Experiment: no stress control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	no stress control
2,462,642	+		LRK55_RS11170	0.59	-0.9
2,462,642	+		LRK55_RS11170	0.59	+0.5
2,462,642	+		LRK55_RS11170	0.59	-1.1
2,462,642	+		LRK55_RS11170	0.59	-0.4
2,462,642	+		LRK55_RS11170	0.59	+2.7
2,462,642	+		LRK55_RS11170	0.59	+0.3
2,462,643	-		LRK55_RS11170	0.59	-0.3
2,462,643	-		LRK55_RS11170	0.59	+0.4
2,462,643	-		LRK55_RS11170	0.59	-0.7
2,462,643	-		LRK55_RS11170	0.59	-1.0
2,462,643	-		LRK55_RS11170	0.59	+0.2
2,462,643	-		LRK55_RS11170	0.59	+0.9
2,462,643	-		LRK55_RS11170	0.59	-0.1
2,462,643	-		LRK55_RS11170	0.59	+1.0
2,462,643	-		LRK55_RS11170	0.59	+0.9
2,462,643	-		LRK55_RS11170	0.59	-0.2
2,462,652	-		LRK55_RS11170	0.60	+0.4
2,462,672	+		LRK55_RS11170	0.61	+1.0
2,462,673	-		LRK55_RS11170	0.61	-0.1
2,462,764	-		LRK55_RS11170	0.65	-0.3
2,462,859	+		LRK55_RS11170	0.69	-0.3
2,463,278	+		LRK55_RS11170	0.89	-1.4
2,463,279	-		LRK55_RS11170	0.89	-1.3
2,463,482	-				+0.8
2,463,482	-				+0.1
2,463,482	-				-0.4
2,463,736	+		LRK55_RS11175	0.10	+0.1
2,463,736	+		LRK55_RS11175	0.10	-0.5
2,463,736	+		LRK55_RS11175	0.10	+0.6
2,463,736	+		LRK55_RS11175	0.10	-0.4
2,463,737	-		LRK55_RS11175	0.10	-1.2
2,463,737	-		LRK55_RS11175	0.10	-0.6
2,463,737	-		LRK55_RS11175	0.10	-0.6
2,463,737	-		LRK55_RS11175	0.10	-1.0
2,463,737	-		LRK55_RS11175	0.10	-0.1
2,463,737	-		LRK55_RS11175	0.10	+0.1
2,463,769	+		LRK55_RS11175	0.13	-0.3
2,463,769	+		LRK55_RS11175	0.13	+0.2
2,463,769	+		LRK55_RS11175	0.13	+1.1
2,463,770	-		LRK55_RS11175	0.13	-0.3
2,463,770	-		LRK55_RS11175	0.13	+1.6
2,463,770	-		LRK55_RS11175	0.13	-1.1
2,463,863	-		LRK55_RS11175	0.22	+0.1
2,463,972	+		LRK55_RS11175	0.31	-0.1
2,463,973	-		LRK55_RS11175	0.31	+1.5
2,463,973	-		LRK55_RS11175	0.31	-0.2
2,464,231	+		LRK55_RS11175	0.54	+1.0
2,464,232	-		LRK55_RS11175	0.54	-2.2
2,464,252	+		LRK55_RS11175	0.56	+1.0
2,464,252	+		LRK55_RS11175	0.56	-0.3
2,464,252	+		LRK55_RS11175	0.56	+0.9
2,464,253	-		LRK55_RS11175	0.56	-0.8
2,464,255	+		LRK55_RS11175	0.56	+0.2
2,464,255	+		LRK55_RS11175	0.56	+0.2
2,464,255	+		LRK55_RS11175	0.56	-0.2
2,464,255	+		LRK55_RS11175	0.56	+0.1
2,464,255	+		LRK55_RS11175	0.56	+0.6
2,464,255	+		LRK55_RS11175	0.56	-0.6
2,464,255	+		LRK55_RS11175	0.56	-0.0
2,464,255	+		LRK55_RS11175	0.56	-0.1
2,464,255	+		LRK55_RS11175	0.56	-1.3
2,464,255	+		LRK55_RS11175	0.56	-0.3
2,464,255	+		LRK55_RS11175	0.56	+0.9
2,464,255	+		LRK55_RS11175	0.56	+0.5
2,464,255	+		LRK55_RS11175	0.56	-0.2
2,464,255	+		LRK55_RS11175	0.56	+0.1
2,464,255	+		LRK55_RS11175	0.56	-0.5
2,464,255	+		LRK55_RS11175	0.56	+0.9
2,464,255	+		LRK55_RS11175	0.56	-0.2
2,464,255	+		LRK55_RS11175	0.56	+0.1
2,464,255	+		LRK55_RS11175	0.56	+0.1
2,464,255	+		LRK55_RS11175	0.56	-0.8
2,464,256	-		LRK55_RS11175	0.56	+1.5
2,464,256	-		LRK55_RS11175	0.56	+0.6
2,464,256	-		LRK55_RS11175	0.56	+0.2
2,464,256	-		LRK55_RS11175	0.56	+0.3
2,464,256	-		LRK55_RS11175	0.56	-1.9
2,464,256	-		LRK55_RS11175	0.56	-0.6
2,464,256	-		LRK55_RS11175	0.56	+1.0
2,464,256	-		LRK55_RS11175	0.56	-0.4
2,464,256	-		LRK55_RS11175	0.56	+0.1
2,464,256	-		LRK55_RS11175	0.56	+1.1
2,464,256	-		LRK55_RS11175	0.56	+0.4
2,464,256	-		LRK55_RS11175	0.56	-0.2
2,464,256	-		LRK55_RS11175	0.56	-1.9
2,464,256	-		LRK55_RS11175	0.56	-0.4
2,464,261	+		LRK55_RS11175	0.57	-0.0
2,464,261	+		LRK55_RS11175	0.57	-0.2
2,464,261	+		LRK55_RS11175	0.57	-0.7
2,464,261	+		LRK55_RS11175	0.57	-0.4
2,464,261	+		LRK55_RS11175	0.57	+0.2
2,464,261	+		LRK55_RS11175	0.57	+0.3
2,464,262	-		LRK55_RS11175	0.57	-1.0
2,464,262	-		LRK55_RS11175	0.57	+0.1
2,464,262	-		LRK55_RS11175	0.57	+0.0
2,464,262	-		LRK55_RS11175	0.57	+1.3
2,464,262	-		LRK55_RS11175	0.57	-0.3
2,464,262	-		LRK55_RS11175	0.57	+1.1
2,464,262	-		LRK55_RS11175	0.57	+0.1
2,464,285	+		LRK55_RS11175	0.59	-0.1
2,464,286	-		LRK55_RS11175	0.59	-0.0
2,464,286	-		LRK55_RS11175	0.59	+0.1
2,464,372	+		LRK55_RS11175	0.67	+0.2
2,464,372	+		LRK55_RS11175	0.67	+0.5
2,464,373	-		LRK55_RS11175	0.67	-0.4
2,464,456	+		LRK55_RS11175	0.74	-0.4
2,464,457	-		LRK55_RS11175	0.74	-0.7
2,464,522	+		LRK55_RS11175	0.80	-1.0
2,464,522	+		LRK55_RS11175	0.80	+0.1
2,464,522	+		LRK55_RS11175	0.80	+0.7
2,464,523	-		LRK55_RS11175	0.80	-1.9
2,464,523	-		LRK55_RS11175	0.80	+0.3
2,464,523	-		LRK55_RS11175	0.80	+1.6
2,464,590	-		LRK55_RS11175	0.86	+0.5
2,464,590	-		LRK55_RS11175	0.86	-0.0
2,464,609	+		LRK55_RS11175	0.88	-0.4
2,464,610	-		LRK55_RS11175	0.88	+1.0
2,464,699	+				+0.5
2,464,699	+				+0.1
2,464,699	+				+0.6
2,464,699	+				+0.0
2,464,699	+				+0.7
2,464,699	+				+1.1
2,464,700	-				+0.9
2,464,700	-				+1.4
2,464,700	-				+2.3
2,464,700	-				-0.3
2,464,700	-				+0.1
2,464,700	-				+1.6
2,464,700	-				+0.4
2,464,702	+				-0.4
2,464,702	+				-0.1
2,464,703	-				+0.1
2,464,703	-				-1.4
2,464,703	-				+0.4
2,464,756	+				-1.2
2,464,757	-				-0.3
2,464,960	+		LRK55_RS11180	0.26	-0.4
2,465,019	+		LRK55_RS11180	0.34	-1.3
2,465,019	+		LRK55_RS11180	0.34	-0.3
2,465,019	+		LRK55_RS11180	0.34	-0.8
2,465,020	-		LRK55_RS11180	0.34	-1.6
2,465,020	-		LRK55_RS11180	0.34	+0.6
2,465,020	-		LRK55_RS11180	0.34	-1.0
2,465,020	-		LRK55_RS11180	0.34	-1.2
2,465,020	-		LRK55_RS11180	0.34	-0.5
2,465,020	-		LRK55_RS11180	0.34	-2.0
2,465,020	-		LRK55_RS11180	0.34	-0.1
2,465,020	-		LRK55_RS11180	0.34	-1.4
2,465,020	-		LRK55_RS11180	0.34	-0.9
2,465,020	-		LRK55_RS11180	0.34	-1.5
2,465,059	+		LRK55_RS11180	0.39	-0.4
2,465,059	+		LRK55_RS11180	0.39	-2.0
2,465,059	+		LRK55_RS11180	0.39	+1.3
2,465,059	+		LRK55_RS11180	0.39	-1.2
2,465,059	+		LRK55_RS11180	0.39	-1.3
2,465,060	-		LRK55_RS11180	0.39	-0.9
2,465,060	-		LRK55_RS11180	0.39	-1.2
2,465,146	+		LRK55_RS11180	0.50	-3.6
2,465,146	+		LRK55_RS11180	0.50	-0.3
2,465,147	-		LRK55_RS11180	0.50	-0.7
2,465,268	+		LRK55_RS11180	0.66	-1.9
2,465,311	+		LRK55_RS11180	0.71	-2.3
2,465,311	+		LRK55_RS11180	0.71	-0.9
2,465,311	+		LRK55_RS11180	0.71	-2.3
2,465,365	+		LRK55_RS11180	0.78	-0.5
2,465,366	-		LRK55_RS11180	0.78	-3.3
2,465,366	-		LRK55_RS11180	0.78	-1.0
2,465,366	-		LRK55_RS11180	0.78	-1.2
2,465,398	+		LRK55_RS11180	0.82	-2.3
2,465,398	+		LRK55_RS11180	0.82	-2.3
2,465,569	-				-0.4
2,465,578	+				+0.6
2,465,612	-				+1.2
2,465,686	+				+0.2
2,465,706	+				+0.1
2,465,706	+				-0.8
2,465,706	+				+0.3
2,465,706	+				+1.1
2,465,706	+				+1.0
2,465,707	-				-0.2
2,465,707	-				+0.1
2,465,707	-				+0.9
2,465,707	-				+0.2
2,465,707	-				+0.7